40#include <unordered_map>
55 auto charBuf =
reinterpret_cast<const unsigned char *
>(
fBuffer);
56 auto checksumBuf =
const_cast<unsigned char *
>(charBuf) + GetDataSize();
57 std::uint64_t xxhash3;
69 return R__FAIL(
"page checksum verification failed, data corruption detected");
76 return R__FAIL(
"invalid attempt to extract non-existing page checksum");
78 assert(fBufferSize >= kNBytesPageChecksum);
79 std::uint64_t checksum;
81 reinterpret_cast<const unsigned char *
>(
fBuffer) + fBufferSize - kNBytesPageChecksum, checksum);
90 auto [itr,
_] = fColumnInfos.emplace(physicalColumnId, std::vector<RColumnInfo>());
91 for (
auto &columnInfo : itr->second) {
92 if (columnInfo.fElementId == elementId) {
93 columnInfo.fRefCounter++;
97 itr->second.emplace_back(
RColumnInfo{elementId, 1});
103 auto itr = fColumnInfos.find(physicalColumnId);
105 for (std::size_t i = 0; i < itr->second.size(); ++i) {
106 if (itr->second[i].fElementId != elementId)
109 itr->second[i].fRefCounter--;
110 if (itr->second[i].fRefCounter == 0) {
111 itr->second.erase(itr->second.begin() + i);
112 if (itr->second.empty()) {
113 fColumnInfos.erase(itr);
124 for (
const auto &[physicalColumnId,
_] : fColumnInfos)
125 result.insert(physicalColumnId);
152std::unique_ptr<ROOT::Experimental::Internal::RPageSource>
156 if (ntupleName.empty()) {
159 if (location.empty()) {
162 if (location.find(
"daos://") == 0)
164 return std::make_unique<RPageSourceDaos>(ntupleName, location, options);
169 return std::make_unique<RPageSourceFile>(ntupleName, location, options);
200 fHasStructure =
true;
207 GetExclDescriptorGuard().MoveIn(AttachImpl());
213 auto clone = CloneImpl();
215 clone->GetExclDescriptorGuard().MoveIn(std::move(*GetSharedDescriptorGuard()->Clone()));
216 clone->fHasStructure =
true;
217 clone->fIsAttached =
true;
224 return GetSharedDescriptorGuard()->GetNEntries();
229 return GetSharedDescriptorGuard()->GetNElements(columnHandle.
fPhysicalId);
235 UnzipClusterImpl(cluster);
242 const auto clusterId = cluster->
GetId();
243 auto descriptorGuard = GetSharedDescriptorGuard();
244 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterId);
246 std::atomic<bool> foundChecksumFailure{
false};
248 std::vector<std::unique_ptr<RColumnElementBase>> allElements;
250 for (
const auto columnId : columnsInCluster) {
254 if (!fActivePhysicalColumns.HasColumnInfos(columnId))
256 const auto &columnInfos = fActivePhysicalColumns.GetColumnInfos(columnId);
258 for (
const auto &info : columnInfos) {
261 const auto &pageRange = clusterDescriptor.GetPageRange(columnId);
262 std::uint64_t pageNo = 0;
263 std::uint64_t firstInPage = 0;
264 for (
const auto &pi : pageRange.fPageInfos) {
270 sealedPage.
SetBufferSize(pi.fLocator.fBytesOnStorage + pi.fHasChecksum * kNBytesPageChecksum);
271 sealedPage.
SetBuffer(onDiskPage->GetAddress());
274 auto taskFunc = [
this, columnId, clusterId, firstInPage, sealedPage, element = allElements.back().get(),
275 &foundChecksumFailure,
276 indexOffset = clusterDescriptor.GetColumnRange(columnId).fFirstElementIndex]() {
277 auto rv = UnsealPage(sealedPage, *element, columnId);
279 foundChecksumFailure =
true;
282 auto newPage = rv.Unwrap();
283 fCounters->fSzUnzip.Add(element->GetSize() * sealedPage.
GetNElements());
286 fPagePool.PreloadPage(std::move(newPage), element->GetIdentifier().fInMemoryType);
289 fTaskScheduler->AddTask(taskFunc);
291 firstInPage += pi.fNElements;
295 fCounters->fNPageUnsealed.Add(pageNo);
299 fTaskScheduler->Wait();
301 if (foundChecksumFailure) {
302 throw RException(
R__FAIL(
"page checksum verification failed, data corruption detected"));
310 auto descriptorGuard = GetSharedDescriptorGuard();
311 const auto &clusterDesc = descriptorGuard->GetClusterDescriptor(clusterKey.
fClusterId);
314 if (clusterDesc.GetColumnRange(physicalColumnId).fIsSuppressed)
317 const auto &pageRange = clusterDesc.GetPageRange(physicalColumnId);
319 for (
const auto &pageInfo : pageRange.fPageInfos) {
325 perPageFunc(physicalColumnId, pageNo, pageInfo);
337 auto cachedPageRef = fPagePool.GetPage(columnId, columnElementId.fInMemoryType, globalIndex);
338 if (!cachedPageRef.Get().IsNull())
339 return cachedPageRef;
341 std::uint64_t idxInCluster;
344 auto descriptorGuard = GetSharedDescriptorGuard();
345 clusterInfo.
fClusterId = descriptorGuard->FindClusterId(columnId, globalIndex);
348 throw RException(
R__FAIL(
"entry with index " + std::to_string(globalIndex) +
" out of bounds"));
350 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterInfo.
fClusterId);
351 const auto &columnRange = clusterDescriptor.GetColumnRange(columnId);
352 if (columnRange.fIsSuppressed)
358 clusterInfo.
fPageInfo = clusterDescriptor.GetPageRange(columnId).Find(idxInCluster);
364 return LoadPageImpl(columnHandle, clusterInfo, idxInCluster);
371 const auto idxInCluster = clusterIndex.
GetIndex();
374 auto cachedPageRef = fPagePool.GetPage(columnId, columnElementId.fInMemoryType, clusterIndex);
375 if (!cachedPageRef.Get().IsNull())
376 return cachedPageRef;
383 auto descriptorGuard = GetSharedDescriptorGuard();
384 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterId);
385 const auto &columnRange = clusterDescriptor.GetColumnRange(columnId);
386 if (columnRange.fIsSuppressed)
391 clusterInfo.
fPageInfo = clusterDescriptor.GetPageRange(columnId).Find(idxInCluster);
397 return LoadPageImpl(columnHandle, clusterInfo, idxInCluster);
403 fCounters = std::make_unique<RCounters>(
RCounters{
407 "volume read from storage (required)"),
409 "volume read from storage (overhead)"),
412 "number of partial clusters preloaded from storage"),
415 "number of pages unzipped and decoded"),
418 "wall clock time spent decompressing"),
420 "CPU time spent reading"),
422 "CPU time spent decompressing"),
424 "bwRead",
"MB/s",
"bandwidth compressed bytes read per second", fMetrics,
426 if (
const auto szReadPayload = metrics.GetLocalCounter(
"szReadPayload")) {
427 if (
const auto szReadOverhead = metrics.GetLocalCounter(
"szReadOverhead")) {
428 if (
const auto timeWallRead = metrics.GetLocalCounter(
"timeWallRead")) {
429 if (
auto walltime = timeWallRead->GetValueAsInt()) {
430 double payload = szReadPayload->GetValueAsInt();
431 double overhead = szReadOverhead->GetValueAsInt();
433 return {
true, (1000. * (payload + overhead) / walltime)};
441 "bwReadUnzip",
"MB/s",
"bandwidth uncompressed bytes read per second", fMetrics,
444 if (
const auto timeWallRead = metrics.
GetLocalCounter(
"timeWallRead")) {
445 if (
auto walltime = timeWallRead->GetValueAsInt()) {
448 return {
true, 1000. * unzip / walltime};
455 "bwUnzip",
"MB/s",
"decompression bandwidth of uncompressed bytes per second", fMetrics,
458 if (
const auto timeWallUnzip = metrics.
GetLocalCounter(
"timeWallUnzip")) {
459 if (
auto walltime = timeWallUnzip->GetValueAsInt()) {
462 return {
true, 1000. * unzip / walltime};
469 "rtReadEfficiency",
"",
"ratio of payload over all bytes read", fMetrics,
471 if (
const auto szReadPayload = metrics.
GetLocalCounter(
"szReadPayload")) {
472 if (
const auto szReadOverhead = metrics.
GetLocalCounter(
"szReadOverhead")) {
473 if (
auto payload = szReadPayload->GetValueAsInt()) {
475 return {
true, 1. / (1. + (1. * szReadOverhead->GetValueAsInt()) / payload)};
482 "rtCompression",
"",
"ratio of compressed bytes / uncompressed bytes", fMetrics,
484 if (
const auto szReadPayload = metrics.
GetLocalCounter(
"szReadPayload")) {
486 if (
auto unzip = szUnzip->GetValueAsInt()) {
487 return {
true, (1. * szReadPayload->GetValueAsInt()) / unzip};
499 return UnsealPage(sealedPage, element, physicalColumnId, *fPageAllocator);
526 memcpy(page.GetBuffer(), sealedPage.
GetBuffer(), bytesPacked);
532 page = std::move(tmp);
550 std::size_t pageSizeLimit)
552 if (fMaxAllocatedBytes - fCurrentAllocatedBytes >= targetAvailableSize)
555 auto itr = fColumnsSortedByPageSize.begin();
556 while (itr != fColumnsSortedByPageSize.end()) {
557 if (itr->fCurrentPageSize <= pageSizeLimit)
559 if (itr->fCurrentPageSize == itr->fInitialPageSize) {
565 auto itrFlush = itr++;
568 if (itr != fColumnsSortedByPageSize.end())
572 if (fMaxAllocatedBytes - fCurrentAllocatedBytes >= targetAvailableSize)
577 itr = fColumnsSortedByPageSize.find(next);
586 auto itr = fColumnsSortedByPageSize.find(key);
587 if (itr == fColumnsSortedByPageSize.end()) {
588 if (!TryEvict(newWritePageSize, 0))
590 fColumnsSortedByPageSize.insert({&column, newWritePageSize, newWritePageSize});
591 fCurrentAllocatedBytes += newWritePageSize;
596 assert(newWritePageSize >= elem.fInitialPageSize);
598 if (newWritePageSize == elem.fCurrentPageSize)
601 fColumnsSortedByPageSize.erase(itr);
603 if (newWritePageSize < elem.fCurrentPageSize) {
605 fCurrentAllocatedBytes -= elem.fCurrentPageSize - newWritePageSize;
606 elem.fCurrentPageSize = newWritePageSize;
607 fColumnsSortedByPageSize.insert(elem);
612 const auto diffBytes = newWritePageSize - elem.fCurrentPageSize;
613 if (!TryEvict(diffBytes, elem.fCurrentPageSize)) {
616 fColumnsSortedByPageSize.insert(elem);
619 fCurrentAllocatedBytes += diffBytes;
620 elem.fCurrentPageSize = newWritePageSize;
621 fColumnsSortedByPageSize.insert(elem);
628 :
RPageStorage(
name), fOptions(options.Clone()), fWritePageMemoryManager(options.GetPageBufferBudget())
638 assert(config.
fPage);
642 unsigned char *pageBuf =
reinterpret_cast<unsigned char *
>(config.
fPage->
GetBuffer());
643 bool isAdoptedBuffer =
true;
645 auto nBytesChecksum = config.
fWriteChecksum * kNBytesPageChecksum;
649 pageBuf =
new unsigned char[nBytesPacked];
650 isAdoptedBuffer =
false;
653 auto nBytesZipped = nBytesPacked;
658 if (!isAdoptedBuffer)
660 pageBuf =
reinterpret_cast<unsigned char *
>(config.
fBuffer);
661 isAdoptedBuffer =
true;
675 const auto nBytes = page.
GetNBytes() + GetWriteOptions().GetEnablePageChecksums() * kNBytesPageChecksum;
676 if (fSealPageBuffer.size() < nBytes)
677 fSealPageBuffer.resize(nBytes);
680 config.
fPage = &page;
683 config.
fWriteChecksum = GetWriteOptions().GetEnablePageChecksums();
685 config.
fBuffer = fSealPageBuffer.data();
687 return SealPage(config);
692 for (
const auto &cb : fOnDatasetCommitCallbacks)
702 const auto nBytes = elementSize * nElements;
703 if (!fWritePageMemoryManager.TryUpdate(*columnHandle.
fColumn, nBytes))
705 return fPageAllocator->NewPage(columnHandle.
fPhysicalId, elementSize, nElements);
710std::unique_ptr<ROOT::Experimental::Internal::RPageSink>
714 if (ntupleName.empty()) {
717 if (location.empty()) {
720 if (location.find(
"daos://") == 0) {
722 return std::make_unique<RPageSinkDaos>(ntupleName, location, options);
729 return std::make_unique<RPageSinkFile>(ntupleName, location, options);
743 auto columnId = fDescriptorBuilder.GetDescriptor().GetNPhysicalColumns();
758 fDescriptorBuilder.AddColumn(columnBuilder.
MakeDescriptor().Unwrap());
765 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
767 if (descriptor.GetNLogicalColumns() > descriptor.GetNPhysicalColumns()) {
770 auto getNColumns = [](
const RFieldBase &
f) -> std::size_t {
771 const auto &reps =
f.GetColumnRepresentatives();
774 return reps.size() * reps[0].size();
776 std::uint32_t nNewPhysicalColumns = 0;
778 nNewPhysicalColumns += getNColumns(*
f);
779 for (
const auto &descendant : *
f)
780 nNewPhysicalColumns += getNColumns(descendant);
782 fDescriptorBuilder.ShiftAliasColumns(nNewPhysicalColumns);
786 auto fieldId = descriptor.GetNFields();
788 fDescriptorBuilder.AddFieldLink(
f.GetParent()->GetOnDiskId(), fieldId);
789 f.SetOnDiskId(fieldId);
793 auto fieldId = descriptor.GetNFields();
796 fDescriptorBuilder.AddFieldLink(
f.GetParent()->GetOnDiskId(), fieldId);
797 fDescriptorBuilder.AddFieldProjection(sourceFieldId, fieldId);
798 f.SetOnDiskId(fieldId);
799 for (
const auto &source : descriptor.GetColumnIterable(sourceFieldId)) {
800 auto targetId = descriptor.GetNLogicalColumns();
806 .ValueRange(source.GetValueRange())
807 .Type(source.GetType())
808 .Index(source.GetIndex())
809 .RepresentationIndex(source.GetRepresentationIndex());
810 fDescriptorBuilder.AddColumn(columnBuilder.
MakeDescriptor().Unwrap());
814 R__ASSERT(firstEntry >= fPrevClusterNEntries);
815 const auto nColumnsBeforeUpdate = descriptor.GetNPhysicalColumns();
818 for (
auto &descendant : *
f)
819 addField(descendant);
822 addProjectedField(*
f);
823 for (
auto &descendant : *
f)
824 addProjectedField(descendant);
827 const auto nColumns = descriptor.GetNPhysicalColumns();
828 for (
DescriptorId_t i = nColumnsBeforeUpdate; i < nColumns; ++i) {
834 columnRange.
fFirstElementIndex = descriptor.GetColumnDescriptor(i).GetFirstElementIndex();
837 fOpenColumnRanges.emplace_back(columnRange);
840 fOpenPageRanges.emplace_back(std::move(pageRange));
845 if (fSerializationContext.GetHeaderSize() > 0)
846 fSerializationContext.MapSchema(descriptor,
true);
853 throw RException(
R__FAIL(
"ROOT bug: unexpected type extra info in UpdateExtraTypeInfo()"));
860 fDescriptorBuilder.SetNTuple(fNTupleName, model.
GetDescription());
861 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
865 fieldZero.SetOnDiskId(0);
867 projectedFields.GetFieldZero().SetOnDiskId(0);
870 for (
auto f : fieldZero.GetSubFields())
871 initialChangeset.fAddedFields.emplace_back(
f);
872 for (
auto f : projectedFields.GetFieldZero().GetSubFields())
873 initialChangeset.fAddedProjectedFields.emplace_back(
f);
874 UpdateSchema(initialChangeset, 0U);
877 auto buffer = std::make_unique<unsigned char[]>(fSerializationContext.GetHeaderSize());
879 InitImpl(buffer.get(), fSerializationContext.GetHeaderSize());
881 fDescriptorBuilder.BeginHeaderExtension();
898 clusterBuilder.
ClusterId(fDescriptorBuilder.GetDescriptor().GetNActiveClusters())
902 for (
unsigned int i = 0; i < fOpenColumnRanges.size(); ++i) {
903 R__ASSERT(fOpenColumnRanges[i].fPhysicalColumnId == i);
904 const auto &columnRange = cluster.GetColumnRange(i);
905 R__ASSERT(columnRange.fPhysicalColumnId == i);
906 const auto &pageRange = cluster.GetPageRange(i);
907 R__ASSERT(pageRange.fPhysicalColumnId == i);
908 clusterBuilder.
CommitColumnRange(i, fOpenColumnRanges[i].fFirstElementIndex, columnRange.fCompressionSettings,
910 fOpenColumnRanges[i].fFirstElementIndex += columnRange.fNElements;
912 fDescriptorBuilder.AddCluster(clusterBuilder.
MoveDescriptor().Unwrap());
913 fPrevClusterNEntries += nEntries;
921 fOpenColumnRanges.at(columnHandle.
fPhysicalId).fIsSuppressed =
true;
930 pageInfo.
fLocator = CommitPageImpl(columnHandle, page);
931 pageInfo.
fHasChecksum = GetWriteOptions().GetEnablePageChecksums();
932 fOpenPageRanges.at(columnHandle.
fPhysicalId).fPageInfos.emplace_back(pageInfo);
938 fOpenColumnRanges.at(physicalColumnId).fNElements += sealedPage.
GetNElements();
942 pageInfo.
fLocator = CommitSealedPageImpl(physicalColumnId, sealedPage);
944 fOpenPageRanges.at(physicalColumnId).fPageInfos.emplace_back(pageInfo);
947std::vector<ROOT::Experimental::RNTupleLocator>
949 std::span<RPageStorage::RSealedPageGroup> ranges,
const std::vector<bool> &
mask)
951 std::vector<ROOT::Experimental::RNTupleLocator> locators;
952 locators.reserve(
mask.size());
954 for (
auto &range : ranges) {
955 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
957 locators.push_back(CommitSealedPageImpl(range.fPhysicalColumnId, *sealedPageIt));
960 locators.shrink_to_fit();
965 std::span<RPageStorage::RSealedPageGroup> ranges)
968 struct RSealedPageLink {
970 std::size_t fLocatorIdx = 0;
973 std::vector<bool>
mask;
975 std::vector<std::size_t> locatorIndexes;
977 std::unordered_map<std::uint64_t, RSealedPageLink> originalPages;
978 std::size_t iLocator = 0;
979 for (
auto &range : ranges) {
980 const auto rangeSize = std::distance(range.fFirst, range.fLast);
981 mask.reserve(
mask.size() + rangeSize);
982 locatorIndexes.reserve(locatorIndexes.size() + rangeSize);
984 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
985 if (!fFeatures.fCanMergePages || !sealedPageIt->GetHasChecksum()) {
986 mask.emplace_back(
true);
987 locatorIndexes.emplace_back(iLocator++);
991 const auto chk = sealedPageIt->GetChecksum().Unwrap();
992 auto itr = originalPages.find(chk);
993 if (itr == originalPages.end()) {
994 originalPages.insert({chk, {&(*sealedPageIt), iLocator}});
995 mask.emplace_back(
true);
996 locatorIndexes.emplace_back(iLocator++);
1000 const auto *
p = itr->second.fSealedPage;
1001 if (sealedPageIt->GetDataSize() !=
p->GetDataSize() ||
1002 memcmp(sealedPageIt->GetBuffer(),
p->GetBuffer(),
p->GetDataSize())) {
1003 mask.emplace_back(
true);
1004 locatorIndexes.emplace_back(iLocator++);
1008 mask.emplace_back(
false);
1009 locatorIndexes.emplace_back(itr->second.fLocatorIdx);
1012 mask.shrink_to_fit();
1013 locatorIndexes.shrink_to_fit();
1016 auto locators = CommitSealedPageVImpl(ranges,
mask);
1019 for (
auto &range : ranges) {
1020 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
1021 fOpenColumnRanges.at(range.fPhysicalColumnId).fNElements += sealedPageIt->GetNElements();
1024 pageInfo.
fNElements = sealedPageIt->GetNElements();
1025 pageInfo.
fLocator = locators[locatorIndexes[i++]];
1026 pageInfo.
fHasChecksum = sealedPageIt->GetHasChecksum();
1027 fOpenPageRanges.at(range.fPhysicalColumnId).fPageInfos.emplace_back(pageInfo);
1039 for (
unsigned int i = 0; i < fOpenColumnRanges.size(); ++i) {
1040 RStagedCluster::RColumnInfo columnInfo;
1041 if (fOpenColumnRanges[i].fIsSuppressed) {
1042 assert(fOpenPageRanges[i].fPageInfos.empty());
1043 columnInfo.fPageRange.fPhysicalColumnId = i;
1044 columnInfo.fIsSuppressed =
true;
1046 fOpenColumnRanges[i].fNElements = 0;
1047 fOpenColumnRanges[i].fIsSuppressed =
false;
1049 std::swap(columnInfo.fPageRange, fOpenPageRanges[i]);
1050 fOpenPageRanges[i].fPhysicalColumnId = i;
1052 columnInfo.fNElements = fOpenColumnRanges[i].fNElements;
1053 fOpenColumnRanges[i].fNElements = 0;
1055 stagedCluster.
fColumnInfos.push_back(std::move(columnInfo));
1058 return stagedCluster;
1063 for (
const auto &cluster : clusters) {
1065 clusterBuilder.
ClusterId(fDescriptorBuilder.GetDescriptor().GetNActiveClusters())
1066 .FirstEntryIndex(fPrevClusterNEntries)
1068 for (
const auto &columnInfo : cluster.fColumnInfos) {
1070 if (columnInfo.fIsSuppressed) {
1071 assert(columnInfo.fPageRange.fPageInfos.empty());
1074 clusterBuilder.
CommitColumnRange(colId, fOpenColumnRanges[colId].fFirstElementIndex,
1075 fOpenColumnRanges[colId].fCompressionSettings, columnInfo.fPageRange);
1076 fOpenColumnRanges[colId].fFirstElementIndex += columnInfo.fNElements;
1081 for (
const auto &columnInfo : cluster.fColumnInfos) {
1082 if (!columnInfo.fIsSuppressed)
1088 const auto &columnRangeFromDesc = clusterBuilder.
GetColumnRange(colId);
1090 columnRangeFromDesc.fFirstElementIndex + columnRangeFromDesc.fNElements;
1093 fDescriptorBuilder.AddCluster(clusterBuilder.
MoveDescriptor().Unwrap());
1094 fPrevClusterNEntries += cluster.fNEntries;
1100 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
1102 const auto nClusters = descriptor.GetNActiveClusters();
1103 std::vector<DescriptorId_t> physClusterIDs;
1104 for (
auto i = fNextClusterInGroup; i < nClusters; ++i) {
1105 physClusterIDs.emplace_back(fSerializationContext.MapClusterId(i));
1109 auto bufPageList = std::make_unique<unsigned char[]>(szPageList);
1112 const auto clusterGroupId = descriptor.GetNClusterGroups();
1113 const auto locator = CommitClusterGroupImpl(bufPageList.get(), szPageList);
1116 if (fNextClusterInGroup == nClusters) {
1119 const auto &firstClusterDesc = descriptor.GetClusterDescriptor(fNextClusterInGroup);
1120 const auto &lastClusterDesc = descriptor.GetClusterDescriptor(nClusters - 1);
1121 cgBuilder.
MinEntry(firstClusterDesc.GetFirstEntryIndex())
1122 .
EntrySpan(lastClusterDesc.GetFirstEntryIndex() + lastClusterDesc.GetNEntries() -
1123 firstClusterDesc.GetFirstEntryIndex())
1124 .
NClusters(nClusters - fNextClusterInGroup);
1126 std::vector<DescriptorId_t> clusterIds;
1127 for (
auto i = fNextClusterInGroup; i < nClusters; ++i) {
1128 clusterIds.emplace_back(i);
1131 fDescriptorBuilder.AddClusterGroup(cgBuilder.
MoveDescriptor().Unwrap());
1132 fSerializationContext.MapClusterGroupId(clusterGroupId);
1134 fNextClusterInGroup = nClusters;
1139 if (!fStreamerInfos.empty()) {
1143 fDescriptorBuilder.AddExtraTypeInfo(extraInfoBuilder.
MoveDescriptor().Unwrap());
1146 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
1149 auto bufFooter = std::make_unique<unsigned char[]>(szFooter);
1152 CommitDatasetImpl(bufFooter.get(), szFooter);
1158 fCounters = std::make_unique<RCounters>(
RCounters{
1160 "number of pages committed to storage"),
1162 "volume written for committed pages"),
1167 "CPU time spent writing"),
1169 "CPU time spent compressing")});
#define R__FORWARD_ERROR(res)
Short-hand to return an RResult<T> in an error state (i.e. after checking)
#define R__FAIL(msg)
Short-hand to return an RResult<T> in an error state; the RError is implicitly converted into RResult...
#define R__ASSERT(e)
Checks condition e and reports a fatal error if it's false.
winID h TVirtualViewer3D TVirtualGLPainter p
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t mask
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t result
A thread-safe integral performance counter.
A metric element that computes its floating point value from other counters.
std::int64_t GetValueAsInt() const override
A collection of Counter objects with a name, a unit, and a description.
const RNTuplePerfCounter * GetLocalCounter(std::string_view name) const
Searches counters registered in this object only. Returns nullptr if name is not found.
An either thread-safe or non thread safe counter for CPU ticks.
Record wall time and CPU time between construction and destruction.
A helper class for piece-wise construction of an RClusterDescriptor.
RResult< RClusterDescriptor > MoveDescriptor()
Move out the full cluster descriptor including page locations.
RClusterDescriptorBuilder & ClusterId(DescriptorId_t clusterId)
RClusterDescriptorBuilder & NEntries(std::uint64_t nEntries)
RClusterDescriptorBuilder & FirstEntryIndex(std::uint64_t firstEntryIndex)
const RClusterDescriptor::RColumnRange & GetColumnRange(DescriptorId_t physicalId)
RResult< void > MarkSuppressedColumnRange(DescriptorId_t physicalId)
Books the given column ID as being suppressed in this cluster.
RResult< void > CommitColumnRange(DescriptorId_t physicalId, std::uint64_t firstElementIndex, std::uint32_t compressionSettings, const RClusterDescriptor::RPageRange &pageRange)
RResult< void > CommitSuppressedColumnRanges(const RNTupleDescriptor &desc)
Sets the first element index and number of elements for all the suppressed column ranges.
A helper class for piece-wise construction of an RClusterGroupDescriptor.
RClusterGroupDescriptorBuilder & PageListLocator(const RNTupleLocator &pageListLocator)
void AddClusters(const std::vector< DescriptorId_t > &clusterIds)
RClusterGroupDescriptorBuilder & MinEntry(std::uint64_t minEntry)
RClusterGroupDescriptorBuilder & ClusterGroupId(DescriptorId_t clusterGroupId)
RClusterGroupDescriptorBuilder & EntrySpan(std::uint64_t entrySpan)
RClusterGroupDescriptorBuilder & NClusters(std::uint32_t nClusters)
RClusterGroupDescriptorBuilder & PageListLength(std::uint64_t pageListLength)
RResult< RClusterGroupDescriptor > MoveDescriptor()
An in-memory subset of the packed and compressed pages of a cluster.
const ColumnSet_t & GetAvailPhysicalColumns() const
const ROnDiskPage * GetOnDiskPage(const ROnDiskPage::Key &key) const
DescriptorId_t GetId() const
std::unordered_set< DescriptorId_t > ColumnSet_t
A helper class for piece-wise construction of an RColumnDescriptor.
RColumnDescriptorBuilder & PhysicalColumnId(DescriptorId_t physicalColumnId)
RColumnDescriptorBuilder & Type(EColumnType type)
RColumnDescriptorBuilder & SetSuppressedDeferred()
RColumnDescriptorBuilder & BitsOnStorage(std::uint16_t bitsOnStorage)
RColumnDescriptorBuilder & RepresentationIndex(std::uint16_t representationIndex)
RColumnDescriptorBuilder & FieldId(DescriptorId_t fieldId)
RColumnDescriptorBuilder & Index(std::uint32_t index)
RColumnDescriptorBuilder & FirstElementIndex(std::uint64_t firstElementIdx)
RResult< RColumnDescriptor > MakeDescriptor() const
Attempt to make a column descriptor.
RColumnDescriptorBuilder & LogicalColumnId(DescriptorId_t logicalColumnId)
RColumnDescriptorBuilder & ValueRange(double min, double max)
A column element encapsulates the translation between basic C++ types and their column representation...
virtual RIdentifier GetIdentifier() const =0
std::size_t GetSize() const
virtual bool IsMappable() const
Derived, typed classes tell whether the on-storage layout is bitwise identical to the memory layout.
virtual void Pack(void *destination, const void *source, std::size_t count) const
If the on-storage layout and the in-memory layout differ, packing creates an on-disk page from an in-...
virtual void Unpack(void *destination, const void *source, std::size_t count) const
If the on-storage layout and the in-memory layout differ, unpacking creates a memory page from an on-...
std::size_t GetPackedSize(std::size_t nElements=1U) const
A column is a storage-backed array of a simple, fixed-size type, from which pages can be mapped into ...
RColumnElementBase * GetElement() const
DescriptorId_t GetOnDiskId() const
std::optional< std::pair< double, double > > GetValueRange() const
std::uint16_t GetRepresentationIndex() const
EColumnType GetType() const
std::uint32_t GetIndex() const
std::size_t GetWritePageCapacity() const
NTupleSize_t GetFirstElementIndex() const
std::uint16_t GetBitsOnStorage() const
static RFieldDescriptorBuilder FromField(const RFieldBase &field)
Make a new RFieldDescriptorBuilder based off a live NTuple field.
RResult< RFieldDescriptor > MakeDescriptor() const
Attempt to make a field descriptor.
RFieldDescriptorBuilder & FieldId(DescriptorId_t fieldId)
size_t Zip(const void *from, size_t nbytes, int compression, Writer_t fnWriter)
Returns the size of the compressed data.
static void Unzip(const void *from, size_t nbytes, size_t dataLen, void *to)
The nbytes parameter provides the size ls of the from buffer.
static std::uint32_t SerializeXxHash3(const unsigned char *data, std::uint64_t length, std::uint64_t &xxhash3, void *buffer)
Writes a XxHash-3 64bit checksum of the byte range given by data and length.
static RContext SerializeHeader(void *buffer, const RNTupleDescriptor &desc)
static std::string SerializeStreamerInfos(const StreamerInfoMap_t &infos)
static std::uint32_t SerializePageList(void *buffer, const RNTupleDescriptor &desc, std::span< DescriptorId_t > physClusterIDs, const RContext &context)
static RResult< StreamerInfoMap_t > DeserializeStreamerInfos(const std::string &extraTypeInfoContent)
static RResult< void > VerifyXxHash3(const unsigned char *data, std::uint64_t length, std::uint64_t &xxhash3)
Expects an xxhash3 checksum in the 8 bytes following data + length and verifies it.
static std::uint32_t DeserializeUInt64(const void *buffer, std::uint64_t &val)
static std::uint32_t SerializeFooter(void *buffer, const RNTupleDescriptor &desc, const RContext &context)
A memory region that contains packed and compressed pages.
void Register(const ROnDiskPage::Key &key, const ROnDiskPage &onDiskPage)
Inserts information about a page stored in fMemory.
A page as being stored on disk, that is packed and compressed.
Uses standard C++ memory allocation for the column data pages.
Abstract interface to allocate and release pages.
virtual RPage NewPage(ColumnId_t columnId, std::size_t elementSize, std::size_t nElements)=0
Reserves memory large enough to hold nElements of the given size.
ColumnHandle_t AddColumn(DescriptorId_t fieldId, RColumn &column) final
Register a new column.
RStagedCluster StageCluster(NTupleSize_t nNewEntries) final
Stage the current cluster and create a new one for the following data.
virtual void InitImpl(unsigned char *serializedHeader, std::uint32_t length)=0
~RPagePersistentSink() override
virtual std::vector< RNTupleLocator > CommitSealedPageVImpl(std::span< RPageStorage::RSealedPageGroup > ranges, const std::vector< bool > &mask)
Vector commit of preprocessed pages.
void InitFromDescriptor(const RNTupleDescriptor &descriptor)
Initialize sink based on an existing descriptor and fill into the descriptor builder.
void CommitPage(ColumnHandle_t columnHandle, const RPage &page) final
Write a page to the storage. The column must have been added before.
static std::unique_ptr< RPageSink > Create(std::string_view ntupleName, std::string_view location, const RNTupleWriteOptions &options=RNTupleWriteOptions())
Guess the concrete derived page source from the location.
RPagePersistentSink(std::string_view ntupleName, const RNTupleWriteOptions &options)
void CommitClusterGroup() final
Write out the page locations (page list envelope) for all the committed clusters since the last call ...
void UpdateSchema(const RNTupleModelChangeset &changeset, NTupleSize_t firstEntry) final
Incorporate incremental changes to the model into the ntuple descriptor.
void CommitSealedPage(DescriptorId_t physicalColumnId, const RPageStorage::RSealedPage &sealedPage) final
Write a preprocessed page to storage. The column must have been added before.
void CommitSealedPageV(std::span< RPageStorage::RSealedPageGroup > ranges) final
Write a vector of preprocessed pages to storage. The corresponding columns must have been added befor...
void CommitSuppressedColumn(ColumnHandle_t columnHandle) final
Commits a suppressed column for the current cluster.
void CommitStagedClusters(std::span< RStagedCluster > clusters) final
Commit staged clusters, logically appending them to the ntuple descriptor.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSink.
void UpdateExtraTypeInfo(const RExtraTypeInfoDescriptor &extraTypeInfo) final
Adds an extra type information record to schema.
void CommitDatasetImpl() final
Abstract interface to write data into an ntuple.
RPageSink(std::string_view ntupleName, const RNTupleWriteOptions &options)
void CommitDataset()
Run the registered callbacks and finalize the current cluster and the entrire data set.
virtual RPage ReservePage(ColumnHandle_t columnHandle, std::size_t nElements)
Get a new, empty page for the given column that can be filled with up to nElements; nElements must be...
RSealedPage SealPage(const RPage &page, const RColumnElementBase &element)
Helper for streaming a page.
RCluster::ColumnSet_t ToColumnSet() const
void Insert(DescriptorId_t physicalColumnId, RColumnElementBase::RIdentifier elementId)
void Erase(DescriptorId_t physicalColumnId, RColumnElementBase::RIdentifier elementId)
ColumnHandle_t AddColumn(DescriptorId_t fieldId, RColumn &column) override
Register a new column.
void LoadStructure()
Loads header and footer without decompressing or deserializing them.
RPageSource(std::string_view ntupleName, const RNTupleReadOptions &fOptions)
void PrepareLoadCluster(const RCluster::RKey &clusterKey, ROnDiskPageMap &pageZeroMap, std::function< void(DescriptorId_t, NTupleSize_t, const RClusterDescriptor::RPageRange::RPageInfo &)> perPageFunc)
Prepare a page range read for the column set in clusterKey.
std::unique_ptr< RPageSource > Clone() const
Open the same storage multiple time, e.g.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSource.
void DropColumn(ColumnHandle_t columnHandle) override
Unregisters a column.
static std::unique_ptr< RPageSource > Create(std::string_view ntupleName, std::string_view location, const RNTupleReadOptions &options=RNTupleReadOptions())
Guess the concrete derived page source from the file name (location)
NTupleSize_t GetNElements(ColumnHandle_t columnHandle)
void UnzipCluster(RCluster *cluster)
Parallel decompression and unpacking of the pages in the given cluster.
virtual RPageRef LoadPage(ColumnHandle_t columnHandle, NTupleSize_t globalIndex)
Allocates and fills a page that contains the index-th element.
void SetEntryRange(const REntryRange &range)
Promise to only read from the given entry range.
virtual void UnzipClusterImpl(RCluster *cluster)
void Attach()
Open the physical storage container and deserialize header and footer.
static RResult< RPage > UnsealPage(const RSealedPage &sealedPage, const RColumnElementBase &element, DescriptorId_t physicalColumnId, RPageAllocator &pageAlloc)
Helper for unstreaming a page.
NTupleSize_t GetNEntries()
Common functionality of an ntuple storage for both reading and writing.
RPageStorage(std::string_view name)
Stores information about the cluster in which this page resides.
A page is a slice of a column that is mapped into memory.
std::size_t GetNBytes() const
The space taken by column elements in the buffer.
static RPage MakePageZero(ColumnId_t columnId, ClusterSize_t::ValueType elementSize)
Make a 'zero' page for column columnId (that is comprised of 0x00 bytes only).
std::uint32_t GetNElements() const
static const void * GetPageZeroBuffer()
Return a pointer to the page zero buffer used if there is no on-disk data for a particular deferred c...
const RFieldBase * GetSourceField(const RFieldBase *target) const
bool TryUpdate(RColumn &column, std::size_t newWritePageSize)
Try to register the new write page size for the given column.
bool TryEvict(std::size_t targetAvailableSize, std::size_t pageSizeLimit)
Flush columns in order of allocated write page size until the sum of all write page allocations leave...
Meta-data for a set of ntuple clusters.
NTupleSize_t GetFirstEntryIndex() const
ClusterSize_t GetNEntries() const
Addresses a column element or field item relative to a particular cluster, instead of a global NTuple...
DescriptorId_t GetClusterId() const
ClusterSize_t::ValueType GetIndex() const
Base class for all ROOT issued exceptions.
A field translates read and write calls from/to underlying columns to/from tree values.
DescriptorId_t GetOnDiskId() const
The on-storage meta-data of an ntuple.
std::unique_ptr< RNTupleModel > CreateModel(const RCreateModelOptions &options=RCreateModelOptions()) const
Re-create the C++ model from the stored meta-data.
DescriptorId_t FindNextClusterId(DescriptorId_t clusterId) const
DescriptorId_t FindClusterId(DescriptorId_t physicalColumnId, NTupleSize_t index) const
const RClusterDescriptor & GetClusterDescriptor(DescriptorId_t clusterId) const
The RNTupleModel encapulates the schema of an ntuple.
const std::string & GetDescription() const
Common user-tunable settings for reading ntuples.
Common user-tunable settings for storing ntuples.
void ThrowOnError()
Short-hand method to throw an exception in the case of errors.
The class is used as a return type for operations that can fail; wraps a value of type T or an RError...
std::unique_ptr< RColumnElementBase > GenerateColumnElement(std::type_index inMemoryType, EColumnType onDiskType)
RProjectedFields & GetProjectedFieldsOfModel(RNTupleModel &model)
RResult< void > EnsureValidNameForRNTuple(std::string_view name, std::string_view where)
Check whether a given string is a valid name according to the RNTuple specification.
void CallConnectPageSinkOnField(RFieldBase &, RPageSink &, NTupleSize_t firstEntry=0)
RFieldZero & GetFieldZeroOfModel(RNTupleModel &model)
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
constexpr NTupleSize_t kInvalidNTupleIndex
constexpr DescriptorId_t kInvalidDescriptorId
The identifiers that specifies the content of a (partial) cluster.
DescriptorId_t fClusterId
ColumnSet_t fPhysicalColumnSet
Every concrete RColumnElement type is identified by its on-disk type (column type) and the in-memory ...
The incremental changes to a RNTupleModel
std::vector< RFieldBase * > fAddedProjectedFields
Points to the projected fields in fModel that were added as part of an updater transaction.
std::vector< RFieldBase * > fAddedFields
Points to the fields in fModel that were added as part of an updater transaction.
On-disk pages within a page source are identified by the column and page number.
Default I/O performance counters that get registered in fMetrics.
Parameters for the SealPage() method.
const RColumnElementBase * fElement
Corresponds to the page's elements, for size calculation etc.
void * fBuffer
Location for sealed output. The memory buffer has to be large enough.
bool fAllowAlias
If false, the output buffer must not point to the input page buffer, which would otherwise be an opti...
int fCompressionSetting
Compression algorithm and level to apply.
bool fWriteChecksum
Adds a 8 byte little-endian xxhash3 checksum to the page payload.
const RPage * fPage
Input page to be sealed.
Cluster that was staged, but not yet logically appended to the RNTuple.
std::uint64_t fNBytesWritten
std::vector< RColumnInfo > fColumnInfos
Summarizes cluster-level information that are necessary to load a certain page.
DescriptorId_t fClusterId
std::uint64_t fColumnOffset
The first element number of the page's column in the given cluster.
RClusterDescriptor::RPageRange::RPageInfoExtended fPageInfo
Location of the page on disk.
Default I/O performance counters that get registered in fMetrics
Used in SetEntryRange / GetEntryRange.
bool IntersectsWith(const RClusterDescriptor &clusterDesc) const
Returns true if the given cluster has entries within the entry range.
DescriptorId_t fPhysicalId
A sealed page contains the bytes of a page as written to storage (packed & compressed).
const void * GetBuffer() const
void SetHasChecksum(bool hasChecksum)
void SetNElements(std::uint32_t nElements)
void SetBuffer(const void *buffer)
void SetBufferSize(std::size_t bufferSize)
RResult< void > VerifyChecksumIfEnabled() const
RResult< std::uint64_t > GetChecksum() const
Returns a failure if the sealed page has no checksum.
std::uint32_t GetNElements() const
std::size_t GetBufferSize() const
bool GetHasChecksum() const
std::size_t GetDataSize() const
std::size_t fCurrentPageSize
bool operator>(const RColumnInfo &other) const
The window of element indexes of a particular column in a particular cluster.
NTupleSize_t fFirstElementIndex
The global index of the first column element in the cluster.
int fCompressionSettings
The usual format for ROOT compression settings (see Compression.h).
ClusterSize_t fNElements
The number of column elements in the cluster.
DescriptorId_t fPhysicalColumnId
ELocatorType fType
For non-disk locators, the value for the Type field.