StandardProfileLikelihoodDemo.C File Reference

Detailed Description

Standard demo of the Profile Likelihood calculator StandardProfileLikelihoodDemo

This is a standard demo that can be used with any ROOT file prepared in the standard way. You specify:

• name for input ROOT file
• name of workspace inside ROOT file that holds model and data
• name of ModelConfig that specifies details for calculator tools
• name of dataset

With default parameters the macro will attempt to run the standard hist2workspace example and read the ROOT file that it produces.

The actual heart of the demo is only about 10 lines long.

The ProfileLikelihoodCalculator is based on Wilks's theorem and the asymptotic properties of the profile likelihood ratio (eg. that it is chi-square distributed for the true value).

Processing /mnt/vdb/lsf/workspace/root-makedoc-v608/rootspi/rdoc/src/v6-08-00-patches/tutorials/roostats/StandardProfileLikelihoodDemo.C...

RooFit v3.60 -- Developed by Wouter Verkerke and David Kirkby 
                Copyright (C) 2000-2013 NIKHEF, University of California & Stanford University
                All rights reserved, please read http://roofit.sourceforge.net/license.txt

[#1] INFO:Minization -- p.d.f. provides expected number of events, including extended term in likelihood.
[#1] INFO:Minization --  Including the following contraint terms in minimization: (alpha_syst2Constraint,alpha_syst3Constraint,gamma_stat_channel1_bin_0_constraint,gamma_stat_channel1_bin_1_constraint)
[#0] PROGRESS:Minization -- ProfileLikelihoodCalcultor::DoGLobalFit - find MLE 
[#0] PROGRESS:Minization -- ProfileLikelihoodCalcultor::DoMinimizeNLL - using Minuit / Migrad with strategy 1
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData_with_constr) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minization -- RooMinimizer::optimizeConst: activating const optimization
RooAbsTestStatistic::initSimMode: creating slave calculator #0 for state channel1 (2 dataset entries)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(channel1_model_Int[obs_x_channel1]) using numeric integrator RooBinIntegrator to calculate Int(obs_x_channel1)
[#1] INFO:Fitting -- RooAbsTestStatistic::initSimMode: created 1 slave calculators.
[#1] INFO:NumericIntegration -- RooRealIntegral::init(channel1_model_Int[obs_x_channel1]) using numeric integrator RooBinIntegrator to calculate Int(obs_x_channel1)
[#1] INFO:Minization --  The following expressions have been identified as constant and will be precalculated and cached: (signal_channel1_nominal,background1_channel1_nominal,background2_channel1_nominal)
[#1] INFO:Minization --  The following expressions will be evaluated in cache-and-track mode: (mc_stat_channel1)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_0_constraint_Int[gamma_stat_channel1_bin_0]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_0)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_1_constraint_Int[gamma_stat_channel1_bin_1]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_1)
[#1] INFO:Minization -- 
  RooFitResult: minimized FCN value: -1044.38, estimated distance to minimum: 2.40386e-08
                covariance matrix quality: Full, accurate covariance matrix
                Status : MINIMIZE=0 

    Floating Parameter    FinalValue +/-  Error   
  --------------------  --------------------------
         SigXsecOverSM    1.1153e+00 +/-  5.86e-01
           alpha_syst2   -8.9017e-03 +/-  9.82e-01
           alpha_syst3    1.7918e-02 +/-  9.48e-01
  gamma_stat_channel1_bin_0    9.9955e-01 +/-  4.93e-02
  gamma_stat_channel1_bin_1    1.0036e+00 +/-  8.01e-02


>>>> RESULT : 95% interval on SigXsecOverSM is : [Warning: lower value for SigXsecOverSM is at limit 0
0, 2.32744]
 
making a plot of the profile likelihood function ....(if it is taking a lot of time use less points or the TF1 drawing option)
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) Creating instance of MINUIT
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData_with_constr) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) determining minimum likelihood for current configurations w.r.t all observable
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) minimum found at (SigXsecOverSM=1.11511)
.
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) Creating instance of MINUIT
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData_with_constr) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) determining minimum likelihood for current configurations w.r.t all observable
RooAbsTestStatistic::initSimMode: creating slave calculator #0 for state channel1 (2 dataset entries)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(channel1_model_Int[obs_x_channel1]) using numeric integrator RooBinIntegrator to calculate Int(obs_x_channel1)
[#1] INFO:Fitting -- RooAbsTestStatistic::initSimMode: created 1 slave calculators.
[#1] INFO:NumericIntegration -- RooRealIntegral::init(channel1_model_Int[obs_x_channel1]) using numeric integrator RooBinIntegrator to calculate Int(obs_x_channel1)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_0_constraint_Int[gamma_stat_channel1_bin_0]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_0)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_1_constraint_Int[gamma_stat_channel1_bin_1]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_1)
[#0] ERROR:InputArguments -- RooArgSet::checkForDup: ERROR argument with name SigXsecOverSM is already in this set
[#1] INFO:Minization -- RooProfileLL::evaluate(nll_simPdf_obsData_with_constr_Profile[SigXsecOverSM]) minimum found at (SigXsecOverSM=1.11509)
......................................................................................................

#include "TFile.h"
#include "TROOT.h"
#include "TSystem.h"
#include "RooWorkspace.h"
#include "RooAbsData.h"
#include "RooRealVar.h"

#include "RooStats/ModelConfig.h"
#include "RooStats/ProfileLikelihoodCalculator.h"
#include "RooStats/LikelihoodInterval.h"
#include "RooStats/LikelihoodIntervalPlot.h"

using namespace RooFit;
using namespace RooStats;

struct ProfileLikelihoodOptions {

double confLevel = 0.95;
int nScanPoints = 50;
bool plotAsTF1 = false;
double poiMinPlot = 1;
double poiMaxPlot = 0;
   bool doHypoTest = false;
   double nullValue = 0;

};

ProfileLikelihoodOptions optPL;

void StandardProfileLikelihoodDemo(const char* infile = "",
                                   const char* workspaceName = "combined",
                                   const char* modelConfigName = "ModelConfig",
                                   const char* dataName = "obsData"){

      double confLevel = optPL.confLevel;
      double nScanPoints = optPL.nScanPoints;
      bool plotAsTF1 = optPL.plotAsTF1;
      double poiXMin = optPL.poiMinPlot;
      double poiXMax = optPL.poiMaxPlot;
      bool doHypoTest = optPL.doHypoTest;
      double nullParamValue = optPL.nullValue;

   // -------------------------------------------------------
   // First part is just to access a user-defined file
   // or create the standard example file if it doesn't exist
      const char* filename = "";
      if (!strcmp(infile,"")) {
         filename = "results/example_combined_GaussExample_model.root";
         bool fileExist = !gSystem->AccessPathName(filename); // note opposite return code
         // if file does not exists generate with histfactory
         if (!fileExist) {
#ifdef _WIN32
            cout << "HistFactory file cannot be generated on Windows - exit" << endl;
            return;
#endif
            // Normally this would be run on the command line
            cout <<"will run standard hist2workspace example"<<endl;
            gROOT->ProcessLine(".! prepareHistFactory .");
            gROOT->ProcessLine(".! hist2workspace config/example.xml");
            cout <<"\n\n---------------------"<<endl;
            cout <<"Done creating example input"<<endl;
            cout <<"---------------------\n\n"<<endl;
         }

      }
      else
         filename = infile;

      // Try to open the file
      TFile *file = TFile::Open(filename);

      // if input file was specified byt not found, quit
      if(!file ){
         cout <<"StandardRooStatsDemoMacro: Input file " << filename << " is not found" << endl;
         return;
      }

   // -------------------------------------------------------
   // Tutorial starts here
   // -------------------------------------------------------

   // get the workspace out of the file
   RooWorkspace* w = (RooWorkspace*) file->Get(workspaceName);
   if(!w){
      cout <<"workspace not found" << endl;
      return;
   }

   // get the modelConfig out of the file
   ModelConfig* mc = (ModelConfig*) w->obj(modelConfigName);

   // get the modelConfig out of the file
   RooAbsData* data = w->data(dataName);

   // make sure ingredients are found
   if(!data || !mc){
      w->Print();
      cout << "data or ModelConfig was not found" <<endl;
      return;
   }

   // ---------------------------------------------
   // create and use the ProfileLikelihoodCalculator
   // to find and plot the 95% confidence interval
   // on the parameter of interest as specified
   // in the model config
   ProfileLikelihoodCalculator pl(*data,*mc);
   pl.SetConfidenceLevel(confLevel); // 95% interval
   LikelihoodInterval* interval = pl.GetInterval();

   // print out the interval on the first Parameter of Interest
   RooRealVar* firstPOI = (RooRealVar*) mc->GetParametersOfInterest()->first();
   cout << "\n>>>> RESULT : " << confLevel*100 << "% interval on " <<firstPOI->GetName()<<" is : ["<<
      interval->LowerLimit(*firstPOI) << ", "<<
      interval->UpperLimit(*firstPOI) <<"]\n "<<endl;

   // make a plot

   cout << "making a plot of the profile likelihood function ....(if it is taking a lot of time use less points or the TF1 drawing option)\n";
   LikelihoodIntervalPlot plot(interval);
   plot.SetNPoints(nScanPoints);  // do not use too many points, it could become very slow for some models
   if (poiXMin < poiXMax) plot.SetRange(poiXMin, poiXMax);
   TString opt;
   if (plotAsTF1) opt += TString("tf1");
   plot.Draw(opt);  // use option TF1 if too slow (plot.Draw("tf1")


   // if requested perform also an hypothesis test for the significance
   if (doHypoTest) {
      RooArgSet nullparams("nullparams");
      nullparams.addClone(*firstPOI);
      nullparams.setRealValue(firstPOI->GetName(), nullParamValue);
      pl.SetNullParameters(nullparams);
      std::cout << "Perform Test of Hypothesis : null Hypothesis is " << firstPOI->GetName() << nullParamValue << std::endl;
      auto result = pl.GetHypoTest();
      std::cout << "\n>>>> Hypotheis Test Result \n";
      result->Print();
   }


}

Author

Kyle Cranmer

Definition in file StandardProfileLikelihoodDemo.C.