Re: ROOT Installation

From: Hovhannes Khandanyan <khandan_at_cern.ch>
Date: Wed, 15 Dec 2010 18:05:11 +0100

   Hi Fons,

Thanks for the comment. Anyhow after trying make -k I got the following error message:

_uhtoc_
_zitoh_

single module) not from earlier dynamic library /Users/Hovke/WORK/ root_bin//lib/root/libHist.dylib(single module) symbol __ZN14TMatrixTSparseIdE16GetRowIndexArrayEv.eh used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib (single module)
symbol TMatrixTSparse<double>::GetRowIndexArray() used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module)
symbol __ZN14TMatrixTSparseIdE16GetColIndexArrayEv.eh used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib (single module)
symbol TMatrixTSparse<double>::GetColIndexArray() used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module)
symbol __ZN14TMatrixTSparseIdE14SetMatrixArrayEPKdPKc.eh used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib (single module)
symbol TMatrixTSparse<double>::SetMatrixArray(double const*, char const*)used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/ libHist.dylib(single module)
symbol __ZN14TMatrixTSparseIdE14GetMatrixArrayEv.eh used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module)
symbol TMatrixTSparse<double>::GetMatrixArray() used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module)
symbol TMatrixTSparse<double>::NormByDiag(TVectorT<double> const&, char const*)used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library /Users/Hovke/WORK/root_bin// lib/root/libHist.dylib(single module)
symbol TMatrixTBase<double>::IsValid() constused from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library / Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module) symbol __ZNK12TMatrixTBaseIdE7IsValidEv.eh used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library / Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module) symbol TMatrixTBase<double>::~TMatrixTBase()used from dynamic library lib/libMatrix.dylib(single module) not from earlier dynamic library / Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module) symbol __ZN12TMatrixTBaseIdED2Ev.eh used from dynamic library lib/ libMatrix.dylib(single module) not from earlier dynamic library / Users/Hovke/WORK/root_bin//lib/root/libHist.dylib(single module) collect2: ld returned 1 exit status
make: *** [bin/h2root] Error 1
gfortran -O2 -m32 -std=legacy -o main/src/g2root.o -c main/src/g2root.f gfortran -O2 -m32 -o bin/g2root main/src/g2root.o \

            -Llib lib/libminicern.dylib \
            /usr/local/lib/gcc/powerpc-apple- 

darwin8.9.0/4.3.0/../../../libgfortran.dylib /usr/local/lib/gcc/ powerpc-apple-darwin8.9.0/4.3.0/libgfortranbegin.a -lm -lpthread -ldl /usr/bin/ld: warning lib/libminicern.dylib cputype (7, architecture i386) does not match cputype (18) for specified -arch flag: ppc (file not loaded)
/usr/bin/ld: warning can't open dynamic library: /libgcc_s.1.dylib referenced from: /usr/local/lib/gcc/powerpc-apple- darwin8.9.0/4.3.0/../../../libgfortran.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: Undefined symbols:
_cutol_
_hlimit_
_lenocc_
_mzdrop_
_mzlink_
_rzfile_
_rzin_
_rzink_
_rzopen_
_ucopy_
_uctoh_
_uhtoc_
_vzero_

collect2: ld returned 1 exit status
make: *** [bin/g2root] Error 1
cp cint/reflex/python/genreflex/gccdemangler.py lib/python/genreflex/ gccdemangler.py
cp cint/reflex/python/genreflex/gencapa.py lib/python/genreflex/ gencapa.py
cp cint/reflex/python/genreflex/gendict.py lib/python/genreflex/ gendict.py
cp cint/reflex/python/genreflex/genheader.py lib/python/genreflex/ genheader.py
cp cint/reflex/python/genreflex/genreflex-rootcint.py lib/python/ genreflex/genreflex-rootcint.py
cp cint/reflex/python/genreflex/genreflex.py lib/python/genreflex/ genreflex.py
cp cint/reflex/python/genreflex/genrootmap.py lib/python/genreflex/ genrootmap.py
cp cint/reflex/python/genreflex/selclass.py lib/python/genreflex/ selclass.py
make: Target `all' not remade because of errors. rm core/utils/src/RStl_tmp.cxx core/utils/src/rootcint_tmp.cxx bash-$

What am I doing wrong.

Thanks,
Hovhannes

On Dec 15, 2010, at 4:05 PM, Fons Rademakers wrote:

> Hi,
>
>   there is something wrong with you gfortran setup as the problem  
> is in linking h2root. In this case try ignoring the error and build  
> using make -k (assuming you don't need the h2root program).
>
> If possible try to upgrade to 10.5/6 because 10.4 will reach end of  
> life soon.
>
>
> Cheers, Fons.
>
>
>
>
> On 22/07/28164 20:59, Hovhannes Khandanyan wrote:
>> Dear ROOTers,
>>
>> I was trying to install ROOT on my Mac OS X 10.4.11
>>
>> with:
>>
>> $ gcc -v
>> Using built-in specs.
>> Target: i686-apple-darwin8
>> Configured with: /private/var/tmp/gcc/gcc-5367.obj~1/src/configure
>> --disable-checking -enable-werror --prefix=/usr --mandir=/share/man
>> --enable-languages=c,objc,c++,obj-c++
>> --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/
>> --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib
>> --build=powerpc-apple-darwin8 --with-arch=nocona --with-tune=generic
>> --program-prefix= --host=i686-apple-darwin8 --target=i686-apple- 
>> darwin8
>> Thread model: posix
>> gcc version
>>
>> using:
>> root_v5.26.00.source.tar
>>
>> by issuing:
>> ./configure --prefix=<dirname>
>> make
>>
>> the error message:
>>
>> symbol TMatrixTSparse<double>::SetRowIndexArray(int*)used from  
>> dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN14/usr/bin/ld: Undefined symbols:
>> _bigbuf_
>> _hbnam_
>> _hcbits_
>> _hcbook_
>> _hcdir_
>> _hdcofl_
>> _hdelet_
>> _hgive_
>> _hgiven_
>> _hgnf_
>> _hgnpar_
>> _hgnt_
>> _hi_
>> _hie_
>> _hif_
>> _hij_
>> _hije_
>> _hijxy_
>> _hlimit_
>> _hnoent_
>> _hntvar2_
>> _hrin_
>> _hropen_
>> _pawc_
>> _quest_
>> _rzcl_
>> _rzink_
>> _uhtoc_
>> _zitoh_
>> TMatrixTSparseIdE16SetColIndexArrayEPi.eh used from dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::SetColIndexArray(int*)used from  
>> dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN14TMatrixTSparseIdE16GetRowIndexArrayEv.eh used from  
>> dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::GetRowIndexArray() used from  
>> dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN14TMatrixTSparseIdE16GetColIndexArrayEv.eh used from  
>> dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::GetColIndexArray() used from  
>> dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN14TMatrixTSparseIdE14SetMatrixArrayEPKdPKc.eh used from  
>> dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::SetMatrixArray(double const*, char
>> const*)used from dynamic library lib/libMatrix.dylib(single  
>> module) not
>> from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN14TMatrixTSparseIdE14GetMatrixArrayEv.eh used from dynamic
>> library lib/libMatrix.dylib(single module) not from earlier  
>> dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::GetMatrixArray() used from dynamic  
>> library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTSparse<double>::NormByDiag(TVectorT<double> const&,  
>> char
>> const*)used from dynamic library lib/libMatrix.dylib(single  
>> module) not
>> from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTBase<double>::IsValid() constused from dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZNK12TMatrixTBaseIdE7IsValidEv.eh used from dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol TMatrixTBase<double>::~TMatrixTBase()used from dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> symbol __ZN12TMatrixTBaseIdED2Ev.eh used from dynamic library
>> lib/libMatrix.dylib(single module) not from earlier dynamic library
>> /Users/Hovke/WORK/root_5-26-00/lib/root/libHist.dylib(single module)
>> collect2: ld returned 1 exit status
>> make: *** [bin/h2root] Error 1
>> rm core/utils/src/RStl_tmp.cxx core/utils/src/rootcint_tmp.cxx
>> bash-$
>>
>> Please let me know what I am doing wrong.
>>
>> Thanks for any help,
>> Hovhannes
>>
>
> -- 
> Org:    CERN, European Laboratory for Particle Physics.
> Mail:   1211 Geneve 23, Switzerland
> E-Mail: Fons.Rademakers_at_cern.ch              Phone: +41 22 7679248
> WWW:    http://fons.rademakers.org           Fax:   +41 22 7669640

Received on Wed Dec 15 2010 - 18:05:48 CET