Log of /trunk/roofit/roostats/src/BayesianCalculator.cxx

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Revision 46081 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 20 13:34:46 2012 UTC (2 years, 4 months ago) by moneta
File length: 56152 byte(s)
Diff to previous 44366

implement the possibility to pass the ConditionalObservables when creating the NLL or doing a fit
In this case the NLL will be computed by normalizing only on the observables and excluding the fglobal observables. 
See http://root.cern.ch/phpBB3/viewtopic.php?f=15&t=15312

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Revision 44366 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 30 15:32:27 2012 UTC (2 years, 7 months ago) by axel
File length: 55918 byte(s)
Diff to previous 44197

Remove #include "Riostream.h" from roofitcore/inc/RooCacheManager.h, which pulls in using namespace std.
Deal with the consequences.

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Revision 44197 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 9 14:52:14 2012 UTC (2 years, 8 months ago) by moneta
File length: 55896 byte(s)
Diff to previous 44092

fix setting and reset of EvalErrorLogCount

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Revision 44092 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu May 3 14:46:24 2012 UTC (2 years, 8 months ago) by moneta
File length: 55176 byte(s)
Diff to previous 44073

fix bug found by  Coverity (42629)

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Revision 44073 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 2 15:11:16 2012 UTC (2 years, 8 months ago) by moneta
File length: 55176 byte(s)
Diff to previous 44059

add new setter methods to be more like the MCMC calc. (SetPriorPdf, SetParameters, SetNuisanceParameters)

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Revision 44059 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 2 07:38:48 2012 UTC (2 years, 8 months ago) by moneta
File length: 55176 byte(s)
Diff to previous 44034

- BayesianCalculator: do not require anymore to have a prior pdf when using an uniform prior
  Make it default case as in case of MCMCCalculator

- AsymptoticC. : fix a comment

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Revision 44034 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Apr 30 14:54:15 2012 UTC (2 years, 8 months ago) by moneta
File length: 54197 byte(s)
Diff to previous 43992

Verious fixes for outstanding Coverity issues (mainly add check of returned pointers to avoid  to dereference them)

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Revision 43992 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Apr 27 16:11:41 2012 UTC (2 years, 8 months ago) by moneta
File length: 54104 byte(s)
Diff to previous 41455

fix ~ 15 high impact coverity issues (Resource leaks in NumberCountingPdfFactory and Uninitilized variables  in other classes)

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Revision 41455 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Oct 18 13:23:21 2011 UTC (3 years, 3 months ago) by moneta
File length: 54074 byte(s)
Diff to previous 40058

merge from development branch r41278 through r41454 
 - add new AsymptoticCalculator and its support in HypoTestInverter
 - add utility function to make the nuisance pdf
   + various small improvements

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Revision 40058 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 28 08:53:59 2011 UTC (3 years, 6 months ago) by moneta
File length: 53672 byte(s)
Diff to previous 39975

fix the class documentation

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Revision 39975 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sun Jun 26 22:49:46 2011 UTC (3 years, 6 months ago) by moneta
File length: 51083 byte(s)
Diff to previous 39865

merge from roostats dev branch : 

 - from Sven: new version of ToyMCSampler
 - from Kyle: update tutorial StandardTestStatDistributionDemo
 -from LM : new version of Inverter with rebuilding pValues distributions using toys
            + update comments

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Revision 39865 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 21 20:58:17 2011 UTC (3 years, 7 months ago) by moneta
File length: 48730 byte(s)
Diff to previous 39343

merge roostats and histfactory from development branch up to revision 39830

 - improvements in HypoTestInverter (better interpolation + plot with bands)  + Coverity fixes 
 -  new version of HistFactory from Kyle adding FlexibleInterpvar

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Revision 39343 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon May 23 14:17:53 2011 UTC (3 years, 8 months ago) by moneta
File length: 48730 byte(s)
Diff to previous 39091

merge from dev branch fix 39342 in BayesianCalculator 
  Remove the constant parameters from the list of nuisance parameters

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Revision 39091 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 4 13:02:56 2011 UTC (3 years, 8 months ago) by moneta
File length: 48542 byte(s)
Diff to previous 38980

fix a coverity report

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Revision 38980 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Apr 20 21:28:46 2011 UTC (3 years, 9 months ago) by moneta
File length: 48492 byte(s)
Diff to previous 38933

fix a bug in making the plot of posterior pdf under certain conditions (after a scan)
fix a bug when using without nuisances which was introduced when the RooProdPdf was removed

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Revision 38933 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Apr 19 20:15:51 2011 UTC (3 years, 9 months ago) by moneta
File length: 47943 byte(s)
Diff to previous 38301

merge from development branch of roostats 
https://root.cern.ch/svn/root/branches/dev/roostats
from revision  38733 up to 38932 

- new version of Bayesian calculator with better debugging and not using RooProdPdf
  and with new MC sampling method based on nuisance 
- fix error in ToyMCSampler when using weights (e.g. importance sampling)

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Revision 38301 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Mar 4 11:15:48 2011 UTC (3 years, 10 months ago) by moneta
File length: 31913 byte(s)
Diff to previous 37487

add a protection when likelihood evaluates to infinity

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Revision 37487 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Dec 10 10:31:05 2010 UTC (4 years, 1 month ago) by moneta
File length: 30526 byte(s)
Diff to previous 37084

update and clean up log messages - (suppress some debug messages committed before by mistake)

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Revision 37084 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 29 21:37:13 2010 UTC (4 years, 1 month ago) by moneta
File length: 29655 byte(s)
Diff to previous 35810

merge from the development branch the changes applied by Kyle and Sven from revision 36852 to 
37056. 

Major changes:  added HybridCalculatorGeneric
                fixes for ModelConfig when reading from a file

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Revision 35810 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 27 20:05:22 2010 UTC (4 years, 3 months ago) by moneta
File length: 30566 byte(s)
Diff to previous 35075

fixes from Coverity. Majors bugs are in MCMCInterval (memory leak + misuse of array)

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Revision 35075 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Aug 30 15:23:13 2010 UTC (4 years, 4 months ago) by moneta
File length: 30002 byte(s)
Diff to previous 35056

fix a bug when shifting likelihood in case of nuisance parameters (wrong sign was used in the previous commit)

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Revision 35056 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Aug 27 20:03:18 2010 UTC (4 years, 4 months ago) by moneta
File length: 29966 byte(s)
Diff to previous 35054

apply fix for numerical evaluation of likelihood by shifting the nll also when there are nuisance parameters

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Revision 35054 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Aug 27 16:42:39 2010 UTC (4 years, 4 months ago) by moneta
File length: 29294 byte(s)
Diff to previous 34134

apply a fix to avoid overflows when calculating the exponent for the likelihood function. 
Shift now the loglikelihood to have 0 at the minimum

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Revision 34134 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jun 25 14:07:15 2010 UTC (4 years, 7 months ago) by moneta
File length: 28596 byte(s)
Diff to previous 34109

fix 2 issues : 
 - remove constant parameters 
 - perform the approximate scan of the posterior function when making the plot (if requested)

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Revision 34109 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jun 24 15:00:16 2010 UTC (4 years, 7 months ago) by moneta
File length: 28183 byte(s)
Diff to previous 33228

merge roostats development branch from revision 33228 to 34108 included

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Revision 33228 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Apr 27 07:09:42 2010 UTC (4 years, 8 months ago) by moneta
File length: 10110 byte(s)
Diff to previous 31876

merge last fix committed in https://root.cern.ch/svn/root/branches/dev/roostats/roofit/roostats in BayesianCalculator

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Revision 31876 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Dec 14 11:11:27 2009 UTC (5 years, 1 month ago) by brun
File length: 9681 byte(s)
Diff to previous 31742

From Lorenzo:
patch improving the RooStats comments

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Revision 31742 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 9 17:34:15 2009 UTC (5 years, 1 month ago) by moneta
File length: 7097 byte(s)
Diff to previous 31741

fix warning coming and an error from previous commit

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Revision 31741 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 9 17:27:53 2009 UTC (5 years, 1 month ago) by moneta
File length: 7088 byte(s)
Diff to previous 31452

import changes from roostats dev branch r31494 through r31740  of 
https://root.cern.ch/svn/root/branches/dev/roostats/roofit/roostats
made by Gregory

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Revision 31452 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Nov 27 16:19:25 2009 UTC (5 years, 1 month ago) by moneta
File length: 6807 byte(s)
Diff to previous 31276

fix a bug in calculating the limit in the BayesianCalculator (merged from dev branch)

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Revision 31276 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Nov 18 15:06:42 2009 UTC (5 years, 2 months ago) by moneta
File length: 6805 byte(s)
Diff to previous 30756

merge developments in https://root.cern.ch/svn/root/branches/dev/roostats/roofit/roostats from revision 30833 to revision 31273 


fix also the tutorials due to the new changes (copy from branch)

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Revision 30756 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Oct 16 09:24:21 2009 UTC (5 years, 3 months ago) by moneta
File length: 6700 byte(s)
Diff to previous 30734

fix initialization of fInterval data member

this fises crash in rs701 tutorial

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Revision 30734 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Oct 15 08:28:08 2009 UTC (5 years, 3 months ago) by moneta
File length: 6651 byte(s)
Diff to previous 30728

fix a bug in producing the posterior plot

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Revision 30728 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Oct 14 13:41:30 2009 UTC (5 years, 3 months ago) by moneta
File length: 6665 byte(s)
Diff to previous 30714

Fix the name of the posterior pdf using the names of all components

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Revision 30714 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Oct 14 08:57:59 2009 UTC (5 years, 3 months ago) by moneta
File length: 6604 byte(s)
Diff to previous 30654

- add a new function to set number of points for producing the PL scan plot 
- cache lower/upper limit values in Likelihood interval class to vaoid re-computing them for same parameter and same confidence level 
- improve BayesianCalculator class. Add an option string in GetPosterior to avoid making two posterior pdf's with same name.

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Revision 30654 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Oct 9 15:07:52 2009 UTC (5 years, 3 months ago) by moneta
File length: 6300 byte(s)
Diff to previous 30524

- clean up of HybridPlot and draw it in current pad
- add support for using CL_S or CL_SB in HypoTestInvertor
- fix a probelm in constructor of BayesianCalculator

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Revision 30524 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Sep 29 09:01:04 2009 UTC (5 years, 3 months ago) by moneta
File length: 6271 byte(s)
Diff to previous 30512

Merging r30520 through r30523 for https://root.cern.ch/svn/root/branches/dev/roostats

  - fix an unitialized variable in BayesianCalculator
  - remove log messages in LikelihoodInterval

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Revision 30512 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 28 17:24:48 2009 UTC (5 years, 3 months ago) by moneta
File length: 6220 byte(s)
Diff to previous 30494

- merge from roostats dev branch ( https://root.cern.ch/svn/root/branches/dev/roostats )
  Merging r30495 through r30511

  in summary: 
  use ModelConfig for MCMCCalculator, FeldmanCousins and NeymanCOnstruction 
  and clean-up by removing Wokspace references 

  add missing TNamed inheritance

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Revision 30494 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sun Sep 27 19:22:05 2009 UTC (5 years, 3 months ago) by moneta
File length: 4766 byte(s)
Diff to previous 30489

merge from dev branch fix for Windows

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Revision 30489 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sat Sep 26 17:38:52 2009 UTC (5 years, 3 months ago) by moneta
File length: 4401 byte(s)
Diff to previous 30462

merge changes from dev branch. Fix for nightly and add  class HypoTestInverter clas from Gregory

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Revision 30462 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Sep 25 16:05:55 2009 UTC (5 years, 3 months ago) by moneta
File length: 3789 byte(s)
Copied from: branches/dev/roostats/roofit/roostats/src/BayesianCalculator.cxx revision 30459
Diff to previous 30450

merge with roostats dev branch all the changes from release 5.24
 (see full log in http://root.cern.ch/viewvc/branches/dev/roostats/?view=log from revision 29258)

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Revision 30450 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Sep 25 13:30:32 2009 UTC (5 years, 3 months ago) by moneta
Original Path: branches/dev/roostats/roofit/roostats/src/BayesianCalculator.cxx
File length: 3789 byte(s)
Copied from: branches/dev/roostats/roofit/roostats/src/BayesianNumIntCalculator.cxx revision 30444
Diff to previous 30055

- New version of ModelConfig

- Rename BayesianNumIntCalculator BayesianCalculator 
   
- improve calculator classes (Hybrid, Likelihood and Bayesian) to use the ModelConfig
  - clean up teh classes removing many setter methods

- remove usage of WorkSpace from the calculator. 

- CombinedCalculator
   store now the pointer to pdf and parameters instead of workspace and names 

- LikelihoodCalculator: 

   fix GetHypoTest() 

- HybridCalculator: 
  remove WS as data member and remove it fro constructor and setter methods

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Revision 30055 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 7 14:31:09 2009 UTC (5 years, 4 months ago) by moneta
Original Path: branches/dev/roostats/roofit/roostats/src/BayesianNumIntCalculator.cxx
File length: 2715 byte(s)
Diff to previous 30028

fix a compilation error on g++ 4.3 and remove some compilation warnings

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Revision 30028 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 3 09:44:05 2009 UTC (5 years, 4 months ago) by schott
Original Path: branches/dev/roostats/roofit/roostats/src/BayesianNumIntCalculator.cxx
File length: 2720 byte(s)
Diff to previous 30027

temporary remove interior filling on the plot

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Revision 30027 - (view) (download) (as text) (annotate) - [select for diffs]
Added Thu Sep 3 09:34:30 2009 UTC (5 years, 4 months ago) by schott
Original Path: branches/dev/roostats/roofit/roostats/src/BayesianNumIntCalculator.cxx
File length: 2718 byte(s)

new simple bayesian with numerical integration