ClassificationKeras.py

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#!/usr/bin/env python
# \file
# \ingroup tutorial_tmva_keras
# \notebook -nodraw
# This tutorial shows how to do classification in TMVA with neural networks
# trained with keras.
#
# \macro_code
#
# \date 2017
# \author TMVA Team
 
from ROOT import TMVA, TFile, TCut
from subprocess import call
from os.path import isfile
 
from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense
from tensorflow.keras.optimizers import SGD
 
 
def create_model():
    # Generate model
 
    # Define model
    model = Sequential()
    model.add(Dense(64, activation='relu', input_dim=4))
    model.add(Dense(2, activation='softmax'))
 
    # Set loss and optimizer
    model.compile(loss='categorical_crossentropy',
                  optimizer=SGD(learning_rate=0.01), weighted_metrics=['accuracy', ])
 
    # Store model to file
    model.save('modelClassification.h5')
    model.summary()
 
 
def run():
    with TFile.Open('TMVA_Classification_Keras.root', 'RECREATE') as output, TFile.Open('tmva_class_example.root') as data:
        factory = TMVA.Factory('TMVAClassification', output,
                               '!V:!Silent:Color:DrawProgressBar:Transformations=D,G:AnalysisType=Classification')
 
        signal = data.Get('TreeS')
        background = data.Get('TreeB')
 
        dataloader = TMVA.DataLoader('dataset')
        for branch in signal.GetListOfBranches():
            dataloader.AddVariable(branch.GetName())
 
        dataloader.AddSignalTree(signal, 1.0)
        dataloader.AddBackgroundTree(background, 1.0)
        dataloader.PrepareTrainingAndTestTree(TCut(''),
                                              'nTrain_Signal=4000:nTrain_Background=4000:SplitMode=Random:NormMode=NumEvents:!V')
 
        # Book methods
        factory.BookMethod(dataloader, TMVA.Types.kFisher, 'Fisher',
                           '!H:!V:Fisher:VarTransform=D,G')
        factory.BookMethod(dataloader, TMVA.Types.kPyKeras, 'PyKeras',
                           'H:!V:VarTransform=D,G:FilenameModel=modelClassification.h5:FilenameTrainedModel=trainedModelClassification.h5:NumEpochs=20:BatchSize=32')
 
        # Run training, test and evaluation
        factory.TrainAllMethods()
        factory.TestAllMethods()
        factory.EvaluateAllMethods()
 
 
if __name__ == "__main__":
    # Setup TMVA
    TMVA.Tools.Instance()
    TMVA.PyMethodBase.PyInitialize()
 
    # Create and store the ML model
    create_model()
 
    # Load data
    if not isfile('tmva_class_example.root'):
        call(['curl', '-L', '-O', 'http://root.cern/files/tmva_class_example.root'])
 
    # Run TMVA
    run()