doc/master/rf409__NumPyPandasToRooFit_8py.html

import ROOT


import numpy as np


# The number of events that we use for the datasets created in this tutorial.

n_events = 10000


# Creating a RooDataSet and exporting it to the Python ecosystem

# --------------------------------------------------------------


# Define the observable.

x = ROOT.RooRealVar("x", "x", -10, 10)


# Define a Gaussian model with its parameters.

mean = ROOT.RooRealVar("mean", "mean of gaussian", 1, -10, 10)

sigma = ROOT.RooRealVar("sigma", "width of gaussian", 1, 0.1, 10)

gauss = ROOT.RooGaussian("gauss", "gaussian PDF", x, mean, sigma)


# Create a RooDataSet.

data = gauss.generate(ROOT.RooArgSet(x), 10000)


# Use RooDataSet.to_numpy() to export dataset to a dictionary of NumPy arrays.

# Real values will be of type `double`, categorical values of type `int`.

arrays = data.to_numpy()


# We can verify that the mean and standard deviation matches our model specification.

print("Mean of numpy array:", np.mean(arrays["x"]))

print("Standard deviation of numpy array:", np.std(arrays["x"]))


# It is also possible to create a Pandas DataFrame directly from the numpy arrays:

df = data.to_pandas()


# Now you can use the DataFrame e.g. for plotting. You can even combine this

# with the RooAbsReal.bins PyROOT function, which returns the binning from

# RooFit as a numpy array!

try:

    import matplotlib.pyplot as plt


    df.hist(column="x", bins=x.bins())

except Exception:

    print(

        'Skipping `df.hist(column="x", bins=x.bins())` because matplotlib could not be imported or was not able to display the plot.'

    )


del data

del arrays

del df


# Creating a dataset with NumPy and importing it to a RooDataSet

# --------------------------------------------------------------


# Now we create some Gaussian toy data with numpy, this time with a different

# mean.

x_arr = np.random.normal(-1.0, 1.0, (n_events,))


# Import the data to a RooDataSet, passing a dictionary of arrays and the

# corresponding RooRealVars just like you would pass to the RooDataSet

# constructor.

data = ROOT.RooDataSet.from_numpy({"x": x_arr}, [x])


# Let's fit the Gaussian to the data. The mean is updated accordingly.

fit_result = gauss.fitTo(data, PrintLevel=-1, Save=True)

fit_result.Print()


# We can now plot the model and the dataset with RooFit.

xframe = x.frame(Title="Gaussian pdf")

data.plotOn(xframe)

gauss.plotOn(xframe)


# Draw RooFit plot on a canvas.

c = ROOT.TCanvas("rf409_NumPyPandasToRooFit", "rf409_NumPyPandasToRooFit", 800, 400)

xframe.Draw()

c.SaveAs("rf409_NumPyPandasToRooFit.png")


# Exporting a RooDataHist to NumPy arrays for histogram counts and bin edges

# --------------------------------------------------------------------------


def print_histogram_output(histogram_output):

    counts, bin_edges = histogram_output

    print(np.array(counts, dtype=int))

    print(bin_edges[0])


# Create a binned clone of the dataset to show RooDataHist to NumPy export.

datahist = data.binnedClone()


# You can also export a RooDataHist to numpy arrays with

# RooDataHist.to_numpy(). As output, you will get a multidimensional array with

# the histogram counts and a list of arrays with bin edges. This is comparable

# to the output of numpy.histogram (or numpy.histogramdd for the

# multidimensional case).

counts, bin_edges = datahist.to_numpy()


print("Counts and bin edges from RooDataHist.to_numpy:")

print_histogram_output((counts, bin_edges))


# Let's compare the output to the counts and bin edges we get with

# numpy.histogramdd when we pass it the original samples:

print("Counts and bin edges from np.histogram:")

print_histogram_output(np.histogramdd([x_arr], bins=[x.bins()]))


# The array values should be the same!


# Importing a RooDataHist from NumPy arrays with histogram counts and bin edges

# -----------------------------------------------------------------------------


# There is also a `RooDataHist.from_numpy` function, again with an interface

# inspired by `numpy.histogramdd`. You need to pass at least the histogram

# counts and the list of variables. The binning is optional: the default

# binning of the RooRealVars is used if not explicitly specified.

datahist_new_1 = ROOT.RooDataHist.from_numpy(counts, [x])


print("RooDataHist imported with default binning and exported back to numpy:")

print_histogram_output(datahist_new_1.to_numpy())


# It's also possible to pass custom bin edges to `RooDataHist.from_numpy`, just

# like you pass them to `numpy.histogramdd` when you get the counts to fill the

# RooDataHist with:

bins = [np.linspace(-10, 10, 21)]

counts, _ = np.histogramdd([x_arr], bins=bins)

datahist_new_2 = ROOT.RooDataHist.from_numpy(counts, [x], bins=bins)


print("RooDataHist imported with linspace binning and exported back to numpy:")

print_histogram_output(datahist_new_2.to_numpy())


# Alternatively, you can specify only the number of bins and the range if your

# binning is uniform. This is preferred over passing the full list of bin

# edges, because RooFit will know that the binning is uniform and do some

# optimizations.

bins = [20]

ranges = [(-10, 10)]

counts, _ = np.histogramdd([x_arr], bins=bins, range=ranges)

datahist_new_3 = ROOT.RooDataHist.from_numpy(counts, [x], bins=bins, ranges=ranges)


print("RooDataHist imported with uniform binning and exported back to numpy:")

print_histogram_output(datahist_new_3.to_numpy())