ROOT 6.08/07 Reference Guide |
LikelihoodInterval is a concrete implementation of the RooStats::ConfInterval interface.
It implements a connected N-dimensional intervals based on the contour of a likelihood ratio. The boundary of the inteval is equivalent to a MINUIT/MINOS contour about the maximum likelihood estimator
The interval does not need to be an ellipse (eg. it is not the HESSE error matrix). The level used to make the contour is the same as that used in MINOS, eg. it uses Wilks' theorem, which states that under certain regularity conditions the function -2* log (profile likelihood ratio) is asymptotically distributed as a chi^2 with N-dof, where N is the number of parameters of interest.
Note, a boundary on the parameter space (eg. s>= 0) or a degeneracy (eg. mass of signal if Nsig = 0) can lead to violations of the conditions necessary for Wilks' theorem to be true.
Also note, one can use any RooAbsReal as the function that will be used in the contour; however, the level of the contour is based on Wilks' theorem as stated above.
Definition at line 71 of file LikelihoodInterval.h.
Public Member Functions | |
LikelihoodInterval (const char *name=0) | |
default constructor More... | |
LikelihoodInterval (const char *name, RooAbsReal *, const RooArgSet *, RooArgSet *=0) | |
Alternate constructor taking a pointer to the profile likelihood ratio, parameter of interest and optionally a snaphot of best parameter of interest for interval. More... | |
virtual | ~LikelihoodInterval () |
destructor More... | |
Bool_t | CheckParameters (const RooArgSet &) const |
check if parameters are correct (i.e. they are the POI of this interval) More... | |
virtual Double_t | ConfidenceLevel () const |
return confidence level More... | |
Bool_t | FindLimits (const RooRealVar ¶m, double &lower, double &upper) |
find both lower and upper interval boundaries for a given parameter retun false if the bounds have not been found More... | |
const RooArgSet * | GetBestFitParameters () const |
return a pointer to a snapshot with best fit parameter of interest More... | |
Int_t | GetContourPoints (const RooRealVar ¶mX, const RooRealVar ¶mY, Double_t *x, Double_t *y, Int_t npoints=30) |
return the 2D-contour points for the given subset of parameters by default make the contour using 30 points. More... | |
RooAbsReal * | GetLikelihoodRatio () |
return the profile log-likelihood ratio function More... | |
virtual RooArgSet * | GetParameters () const |
return a cloned list of parameters of interest. User manages the return object More... | |
virtual Bool_t | IsInInterval (const RooArgSet &) const |
check if given point is in the interval More... | |
Double_t | LowerLimit (const RooRealVar ¶m) |
return the lower bound of the interval on a given parameter More... | |
Double_t | LowerLimit (const RooRealVar ¶m, bool &status) |
Compute lower limit, check first if limit has been computed status is a boolean flag which will b set to false in case of error and is true if calculation is successful in case of error return also a lower limit value of zero. More... | |
virtual void | SetConfidenceLevel (Double_t cl) |
set the confidence level for the interval (e.g 0.682 for a 1-sigma interval) More... | |
Double_t | UpperLimit (const RooRealVar ¶m) |
return the upper bound of the interval on a given parameter More... | |
Double_t | UpperLimit (const RooRealVar ¶m, bool &status) |
Compute upper limit, check first if limit has been computed status is a boolean flag which will b set to false in case of error and is true if calculation is successful in case of error return also a lower limit value of zero. More... | |
Public Member Functions inherited from RooStats::ConfInterval | |
ConfInterval (const char *name=0) | |
constructor given name and title More... | |
virtual | ~ConfInterval () |
destructor More... | |
ConfInterval & | operator= (const ConfInterval &other) |
operator= More... | |
Public Member Functions inherited from TNamed | |
TNamed () | |
TNamed (const char *name, const char *title) | |
TNamed (const TString &name, const TString &title) | |
TNamed (const TNamed &named) | |
TNamed copy ctor. More... | |
virtual | ~TNamed () |
virtual void | Clear (Option_t *option="") |
Set name and title to empty strings (""). More... | |
virtual TObject * | Clone (const char *newname="") const |
Make a clone of an object using the Streamer facility. More... | |
virtual Int_t | Compare (const TObject *obj) const |
Compare two TNamed objects. More... | |
virtual void | Copy (TObject &named) const |
Copy this to obj. More... | |
virtual void | FillBuffer (char *&buffer) |
Encode TNamed into output buffer. More... | |
virtual const char * | GetName () const |
Returns name of object. More... | |
virtual const char * | GetTitle () const |
Returns title of object. More... | |
virtual ULong_t | Hash () const |
Return hash value for this object. More... | |
virtual Bool_t | IsSortable () const |
virtual void | ls (Option_t *option="") const |
List TNamed name and title. More... | |
TNamed & | operator= (const TNamed &rhs) |
TNamed assignment operator. More... | |
virtual void | Print (Option_t *option="") const |
Print TNamed name and title. More... | |
virtual void | SetName (const char *name) |
Set the name of the TNamed. More... | |
virtual void | SetNameTitle (const char *name, const char *title) |
Set all the TNamed parameters (name and title). More... | |
virtual void | SetTitle (const char *title="") |
Set the title of the TNamed. More... | |
virtual Int_t | Sizeof () const |
Return size of the TNamed part of the TObject. More... | |
Public Member Functions inherited from TObject | |
TObject () | |
TObject constructor. More... | |
TObject (const TObject &object) | |
TObject copy ctor. More... | |
virtual | ~TObject () |
TObject destructor. More... | |
void | AbstractMethod (const char *method) const |
Use this method to implement an "abstract" method that you don't want to leave purely abstract. More... | |
virtual void | AppendPad (Option_t *option="") |
Append graphics object to current pad. More... | |
virtual void | Browse (TBrowser *b) |
Browse object. May be overridden for another default action. More... | |
virtual const char * | ClassName () const |
Returns name of class to which the object belongs. More... | |
virtual void | Delete (Option_t *option="") |
Delete this object. More... | |
virtual Int_t | DistancetoPrimitive (Int_t px, Int_t py) |
Computes distance from point (px,py) to the object. More... | |
virtual void | Draw (Option_t *option="") |
Default Draw method for all objects. More... | |
virtual void | DrawClass () const |
Draw class inheritance tree of the class to which this object belongs. More... | |
virtual TObject * | DrawClone (Option_t *option="") const |
Draw a clone of this object in the current pad. More... | |
virtual void | Dump () const |
Dump contents of object on stdout. More... | |
virtual void | Error (const char *method, const char *msgfmt,...) const |
Issue error message. More... | |
virtual void | Execute (const char *method, const char *params, Int_t *error=0) |
Execute method on this object with the given parameter string, e.g. More... | |
virtual void | Execute (TMethod *method, TObjArray *params, Int_t *error=0) |
Execute method on this object with parameters stored in the TObjArray. More... | |
virtual void | ExecuteEvent (Int_t event, Int_t px, Int_t py) |
Execute action corresponding to an event at (px,py). More... | |
virtual void | Fatal (const char *method, const char *msgfmt,...) const |
Issue fatal error message. More... | |
virtual TObject * | FindObject (const char *name) const |
Must be redefined in derived classes. More... | |
virtual TObject * | FindObject (const TObject *obj) const |
Must be redefined in derived classes. More... | |
virtual Option_t * | GetDrawOption () const |
Get option used by the graphics system to draw this object. More... | |
virtual const char * | GetIconName () const |
Returns mime type name of object. More... | |
virtual char * | GetObjectInfo (Int_t px, Int_t py) const |
Returns string containing info about the object at position (px,py). More... | |
virtual Option_t * | GetOption () const |
virtual UInt_t | GetUniqueID () const |
Return the unique object id. More... | |
virtual Bool_t | HandleTimer (TTimer *timer) |
Execute action in response of a timer timing out. More... | |
virtual void | Info (const char *method, const char *msgfmt,...) const |
Issue info message. More... | |
virtual Bool_t | InheritsFrom (const char *classname) const |
Returns kTRUE if object inherits from class "classname". More... | |
virtual Bool_t | InheritsFrom (const TClass *cl) const |
Returns kTRUE if object inherits from TClass cl. More... | |
virtual void | Inspect () const |
Dump contents of this object in a graphics canvas. More... | |
void | InvertBit (UInt_t f) |
virtual Bool_t | IsEqual (const TObject *obj) const |
Default equal comparison (objects are equal if they have the same address in memory). More... | |
virtual Bool_t | IsFolder () const |
Returns kTRUE in case object contains browsable objects (like containers or lists of other objects). More... | |
Bool_t | IsOnHeap () const |
Bool_t | IsZombie () const |
void | MayNotUse (const char *method) const |
Use this method to signal that a method (defined in a base class) may not be called in a derived class (in principle against good design since a child class should not provide less functionality than its parent, however, sometimes it is necessary). More... | |
virtual Bool_t | Notify () |
This method must be overridden to handle object notification. More... | |
void | Obsolete (const char *method, const char *asOfVers, const char *removedFromVers) const |
Use this method to declare a method obsolete. More... | |
void | operator delete (void *ptr) |
Operator delete. More... | |
void | operator delete[] (void *ptr) |
Operator delete []. More... | |
void * | operator new (size_t sz) |
void * | operator new (size_t sz, void *vp) |
void * | operator new[] (size_t sz) |
void * | operator new[] (size_t sz, void *vp) |
TObject & | operator= (const TObject &rhs) |
TObject assignment operator. More... | |
virtual void | Paint (Option_t *option="") |
This method must be overridden if a class wants to paint itself. More... | |
virtual void | Pop () |
Pop on object drawn in a pad to the top of the display list. More... | |
virtual Int_t | Read (const char *name) |
Read contents of object with specified name from the current directory. More... | |
virtual void | RecursiveRemove (TObject *obj) |
Recursively remove this object from a list. More... | |
void | ResetBit (UInt_t f) |
virtual void | SaveAs (const char *filename="", Option_t *option="") const |
Save this object in the file specified by filename. More... | |
virtual void | SavePrimitive (std::ostream &out, Option_t *option="") |
Save a primitive as a C++ statement(s) on output stream "out". More... | |
void | SetBit (UInt_t f, Bool_t set) |
Set or unset the user status bits as specified in f. More... | |
void | SetBit (UInt_t f) |
virtual void | SetDrawOption (Option_t *option="") |
Set drawing option for object. More... | |
virtual void | SetUniqueID (UInt_t uid) |
Set the unique object id. More... | |
virtual void | SysError (const char *method, const char *msgfmt,...) const |
Issue system error message. More... | |
Bool_t | TestBit (UInt_t f) const |
Int_t | TestBits (UInt_t f) const |
virtual void | UseCurrentStyle () |
Set current style settings in this object This function is called when either TCanvas::UseCurrentStyle or TROOT::ForceStyle have been invoked. More... | |
virtual void | Warning (const char *method, const char *msgfmt,...) const |
Issue warning message. More... | |
virtual Int_t | Write (const char *name=0, Int_t option=0, Int_t bufsize=0) |
Write this object to the current directory. More... | |
virtual Int_t | Write (const char *name=0, Int_t option=0, Int_t bufsize=0) const |
Write this object to the current directory. More... | |
Protected Member Functions | |
bool | CreateMinimizer () |
internal function to create the minimizer for finding the contours More... | |
void | ResetLimits () |
reset the cached limit values More... | |
Protected Member Functions inherited from TObject | |
virtual void | DoError (int level, const char *location, const char *fmt, va_list va) const |
Interface to ErrorHandler (protected). More... | |
void | MakeZombie () |
Private Attributes | |
RooArgSet * | fBestFitParams |
parameters of interest for this interval More... | |
Double_t | fConfidenceLevel |
likelihood ratio function used to make contours (managed internally) More... | |
std::shared_ptr< RooFunctor > | fFunctor |
transient pointer to minimizer class used to find limits and contour More... | |
RooAbsReal * | fLikelihoodRatio |
snapshot of the model parameters with best fit value (managed internally) More... | |
std::map< std::string, double > | fLowerLimits |
Requested confidence level (eg. 0.95 for 95% CL) More... | |
std::shared_ptr< ROOT::Math::IMultiGenFunction > | fMinFunc |
transient pointer to functor class used by the minimizer More... | |
std::shared_ptr< ROOT::Math::Minimizer > | fMinimizer |
map with cached upper bound values More... | |
RooArgSet | fParameters |
std::map< std::string, double > | fUpperLimits |
map with cached lower bound values More... | |
Additional Inherited Members | |
Public Types inherited from TObject | |
enum | { kIsOnHeap = 0x01000000, kNotDeleted = 0x02000000, kZombie = 0x04000000, kBitMask = 0x00ffffff } |
enum | { kSingleKey = BIT(0), kOverwrite = BIT(1), kWriteDelete = BIT(2) } |
enum | EStatusBits { kCanDelete = BIT(0), kMustCleanup = BIT(3), kObjInCanvas = BIT(3), kIsReferenced = BIT(4), kHasUUID = BIT(5), kCannotPick = BIT(6), kNoContextMenu = BIT(8), kInvalidObject = BIT(13) } |
Static Public Member Functions inherited from TObject | |
static Long_t | GetDtorOnly () |
Return destructor only flag. More... | |
static Bool_t | GetObjectStat () |
Get status of object stat flag. More... | |
static void | SetDtorOnly (void *obj) |
Set destructor only flag. More... | |
static void | SetObjectStat (Bool_t stat) |
Turn on/off tracking of objects in the TObjectTable. More... | |
Protected Attributes inherited from TNamed | |
TString | fName |
TString | fTitle |
#include <RooStats/LikelihoodInterval.h>
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explicit |
default constructor
Default constructor with name and title.
Definition at line 60 of file LikelihoodInterval.cxx.
LikelihoodInterval::LikelihoodInterval | ( | const char * | name, |
RooAbsReal * | lr, | ||
const RooArgSet * | params, | ||
RooArgSet * | bestParams = 0 |
||
) |
Alternate constructor taking a pointer to the profile likelihood ratio, parameter of interest and optionally a snaphot of best parameter of interest for interval.
Definition at line 69 of file LikelihoodInterval.cxx.
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virtual |
check if parameters are correct (i.e. they are the POI of this interval)
check that the parameters are correct
Implements RooStats::ConfInterval.
Definition at line 149 of file LikelihoodInterval.cxx.
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inlinevirtual |
return confidence level
Implements RooStats::ConfInterval.
Definition at line 92 of file LikelihoodInterval.h.
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protected |
internal function to create the minimizer for finding the contours
Definition at line 200 of file LikelihoodInterval.cxx.
bool LikelihoodInterval::FindLimits | ( | const RooRealVar & | param, |
double & | lower, | ||
double & | upper | ||
) |
find both lower and upper interval boundaries for a given parameter retun false if the bounds have not been found
Definition at line 276 of file LikelihoodInterval.cxx.
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inline |
return a pointer to a snapshot with best fit parameter of interest
Definition at line 126 of file LikelihoodInterval.h.
Int_t LikelihoodInterval::GetContourPoints | ( | const RooRealVar & | paramX, |
const RooRealVar & | paramY, | ||
Double_t * | x, | ||
Double_t * | y, | ||
Int_t | npoints = 30 |
||
) |
return the 2D-contour points for the given subset of parameters by default make the contour using 30 points.
The User has to preallocate the x and y array which will return the set of x and y points defining the contour. The return value of the funciton specify the number of contour point found. In case of error a zero is returned
Definition at line 351 of file LikelihoodInterval.cxx.
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inline |
return the profile log-likelihood ratio function
Definition at line 123 of file LikelihoodInterval.h.
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virtual |
return a cloned list of parameters of interest. User manages the return object
returns list of parameters
Implements RooStats::ConfInterval.
Definition at line 141 of file LikelihoodInterval.cxx.
check if given point is in the interval
This is the main method to satisfy the RooStats::ConfInterval interface.
It returns true if the parameter point is in the interval.
Implements RooStats::ConfInterval.
Definition at line 93 of file LikelihoodInterval.cxx.
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inline |
return the lower bound of the interval on a given parameter
Definition at line 102 of file LikelihoodInterval.h.
Double_t LikelihoodInterval::LowerLimit | ( | const RooRealVar & | param, |
bool & | status | ||
) |
Compute lower limit, check first if limit has been computed status is a boolean flag which will b set to false in case of error and is true if calculation is successful in case of error return also a lower limit value of zero.
Definition at line 170 of file LikelihoodInterval.cxx.
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protected |
reset the cached limit values
Definition at line 193 of file LikelihoodInterval.cxx.
set the confidence level for the interval (e.g 0.682 for a 1-sigma interval)
Implements RooStats::ConfInterval.
Definition at line 89 of file LikelihoodInterval.h.
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inline |
return the upper bound of the interval on a given parameter
Definition at line 106 of file LikelihoodInterval.h.
Double_t LikelihoodInterval::UpperLimit | ( | const RooRealVar & | param, |
bool & | status | ||
) |
Compute upper limit, check first if limit has been computed status is a boolean flag which will b set to false in case of error and is true if calculation is successful in case of error return also a lower limit value of zero.
Definition at line 184 of file LikelihoodInterval.cxx.
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private |
parameters of interest for this interval
Definition at line 139 of file LikelihoodInterval.h.
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private |
likelihood ratio function used to make contours (managed internally)
Definition at line 141 of file LikelihoodInterval.h.
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private |
transient pointer to minimizer class used to find limits and contour
Definition at line 145 of file LikelihoodInterval.h.
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private |
snapshot of the model parameters with best fit value (managed internally)
Definition at line 140 of file LikelihoodInterval.h.
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private |
Requested confidence level (eg. 0.95 for 95% CL)
Definition at line 142 of file LikelihoodInterval.h.
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private |
transient pointer to functor class used by the minimizer
Definition at line 146 of file LikelihoodInterval.h.
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private |
map with cached upper bound values
Definition at line 144 of file LikelihoodInterval.h.
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private |
Definition at line 138 of file LikelihoodInterval.h.
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private |
map with cached lower bound values
Definition at line 143 of file LikelihoodInterval.h.