ROOT 6.08/07 Reference Guide |
Definition at line 73 of file DecisionTree.h.
Public Types | |
enum | EPruneMethod { kExpectedErrorPruning =0, kCostComplexityPruning, kNoPruning } |
typedef std::vector< const TMVA::Event * > | EventConstList |
typedef std::vector< TMVA::Event * > | EventList |
Public Member Functions | |
DecisionTree (void) | |
DecisionTree (SeparationBase *sepType, Float_t minSize, Int_t nCuts, DataSetInfo *=NULL, UInt_t cls=0, Bool_t randomisedTree=kFALSE, Int_t useNvars=0, Bool_t usePoissonNvars=kFALSE, UInt_t nMaxDepth=9999999, Int_t iSeed=fgRandomSeed, Float_t purityLimit=0.5, Int_t treeID=0) | |
constructor specifying the separation type, the min number of events in a no that is still subjected to further splitting, the number of bins in the grid used in applying the cut for the node splitting. More... | |
DecisionTree (const DecisionTree &d) | |
copy constructor that creates a true copy, i.e. More... | |
virtual | ~DecisionTree (void) |
destructor More... | |
void | ApplyValidationSample (const EventConstList *validationSample) const |
run the validation sample through the (pruned) tree and fill in the nodes the variables NSValidation and NBValidadtion (i.e. More... | |
UInt_t | BuildTree (const EventConstList &eventSample, DecisionTreeNode *node=NULL) |
building the decision tree by recursively calling the splitting of one (root-) node into two daughter nodes (returns the number of nodes) More... | |
Double_t | CheckEvent (const TMVA::Event *, Bool_t UseYesNoLeaf=kFALSE) const |
the event e is put into the decision tree (starting at the root node) and the output is NodeType (signal) or (background) of the final node (basket) in which the given events ends up. More... | |
void | CheckEventWithPrunedTree (const TMVA::Event *) const |
pass a single validation event throught a pruned decision tree on the way down the tree, fill in all the "intermediate" information that would normally be there from training. More... | |
virtual const char * | ClassName () const |
UInt_t | CleanTree (DecisionTreeNode *node=NULL) |
remove those last splits that result in two leaf nodes that are both of the type (i.e. More... | |
void | ClearTree () |
clear the tree nodes (their S/N, Nevents etc), just keep the structure of the tree More... | |
UInt_t | CountLeafNodes (TMVA::Node *n=NULL) |
return the number of terminal nodes in the sub-tree below Node n More... | |
virtual DecisionTreeNode * | CreateNode (UInt_t) const |
virtual BinaryTree * | CreateTree () const |
void | DescendTree (Node *n=NULL) |
descend a tree to find all its leaf nodes More... | |
Bool_t | DoRegression () const |
void | FillEvent (const TMVA::Event &event, TMVA::DecisionTreeNode *node) |
fill the existing the decision tree structure by filling event in from the top node and see where they happen to end up More... | |
void | FillTree (const EventList &eventSample) |
Types::EAnalysisType | GetAnalysisType (void) |
TMVA::DecisionTreeNode * | GetEventNode (const TMVA::Event &e) const |
get the pointer to the leaf node where a particular event ends up in... More... | |
std::vector< Double_t > | GetFisherCoefficients (const EventConstList &eventSample, UInt_t nFisherVars, UInt_t *mapVarInFisher) |
calculate the fisher coefficients for the event sample and the variables used More... | |
Int_t | GetNNodesBeforePruning () |
Node * | GetNode (ULong_t sequence, UInt_t depth) |
retrieve node from the tree. More... | |
Double_t | GetNodePurityLimit () const |
Double_t | GetPruneStrength () const |
void | GetRandomisedVariables (Bool_t *useVariable, UInt_t *variableMap, UInt_t &nVars) |
virtual DecisionTreeNode * | GetRoot () const |
Double_t | GetSumWeights (const EventConstList *validationSample) const |
calculate the normalization factor for a pruning validation sample More... | |
Int_t | GetTreeID () |
std::vector< Double_t > | GetVariableImportance () |
Return the relative variable importance, normalized to all variables together having the importance 1. More... | |
Double_t | GetVariableImportance (UInt_t ivar) |
returns the relative improtance of variable ivar More... | |
void | PruneNode (TMVA::DecisionTreeNode *node) |
prune away the subtree below the node More... | |
void | PruneNodeInPlace (TMVA::DecisionTreeNode *node) |
prune a node temporaily (without actually deleting its decendants which allows testing the pruned tree quality for many different pruning stages without "touching" the tree. More... | |
Double_t | PruneTree (const EventConstList *validationSample=NULL) |
prune (get rid of internal nodes) the Decision tree to avoid overtraining serveral different pruning methods can be applied as selected by the variable "fPruneMethod". More... | |
void | SetAnalysisType (Types::EAnalysisType t) |
void | SetMinLinCorrForFisher (Double_t min) |
void | SetNodePurityLimit (Double_t p) |
void | SetNVars (Int_t n) |
void | SetParentTreeInNodes (Node *n=NULL) |
descend a tree to find all its leaf nodes, fill max depth reached in the tree at the same time. More... | |
void | SetPruneMethod (EPruneMethod m=kCostComplexityPruning) |
void | SetPruneStrength (Double_t p) |
void | SetTreeID (Int_t treeID) |
void | SetUseExclusiveVars (Bool_t t=kTRUE) |
void | SetUseFisherCuts (Bool_t t=kTRUE) |
Double_t | TestPrunedTreeQuality (const DecisionTreeNode *dt=NULL, Int_t mode=0) const |
return the misclassification rate of a pruned tree a "pruned tree" may have set the variable "IsTerminal" to "arbitrary" at any node, hence this tree quality testing will stop there, hence test the pruned tree (while the full tree is still in place for normal/later use) More... | |
Double_t | TrainNode (const EventConstList &eventSample, DecisionTreeNode *node) |
Double_t | TrainNodeFast (const EventConstList &eventSample, DecisionTreeNode *node) |
Decide how to split a node using one of the variables that gives the best separation of signal/background. More... | |
Double_t | TrainNodeFull (const EventConstList &eventSample, DecisionTreeNode *node) |
Public Member Functions inherited from TMVA::BinaryTree | |
BinaryTree (void) | |
constructor for a yet "empty" tree. Needs to be filled afterwards More... | |
virtual | ~BinaryTree () |
destructor (deletes the nodes and "events" if owned by the tree More... | |
virtual void * | AddXMLTo (void *parent) const |
add attributes to XML More... | |
UInt_t | CountNodes (Node *n=NULL) |
return the number of nodes in the tree. (make a new count –> takes time) More... | |
Node * | GetLeftDaughter (Node *n) |
get left daughter node current node "n" More... | |
UInt_t | GetNNodes () const |
Node * | GetRightDaughter (Node *n) |
get right daughter node current node "n" More... | |
UInt_t | GetTotalTreeDepth () const |
virtual void | Print (std::ostream &os) const |
recursively print the tree More... | |
virtual void | Read (std::istream &istr, UInt_t tmva_Version_Code=TMVA_VERSION_CODE) |
Read the binary tree from an input stream. More... | |
virtual void | ReadXML (void *node, UInt_t tmva_Version_Code=TMVA_VERSION_CODE) |
read attributes from XML More... | |
void | SetRoot (Node *r) |
void | SetTotalTreeDepth (Int_t depth) |
void | SetTotalTreeDepth (Node *n=NULL) |
descend a tree to find all its leaf nodes, fill max depth reached in the tree at the same time. More... | |
Static Public Member Functions | |
static DecisionTree * | CreateFromXML (void *node, UInt_t tmva_Version_Code=TMVA_VERSION_CODE) |
re-create a new tree (decision tree or search tree) from XML More... | |
Private Member Functions | |
Double_t | SamplePurity (EventList eventSample) |
calculates the purity S/(S+B) of a given event sample More... | |
Static Private Attributes | |
static const Int_t | fgDebugLevel = 0 |
static const Int_t | fgRandomSeed = 0 |
Additional Inherited Members | |
Protected Member Functions inherited from TMVA::BinaryTree | |
void | DeleteNode (Node *) |
protected, recursive, function used by the class destructor and when Pruning More... | |
MsgLogger & | Log () const |
Protected Attributes inherited from TMVA::BinaryTree | |
UInt_t | fDepth |
UInt_t | fNNodes |
Node * | fRoot |
#include <TMVA/DecisionTree.h>
typedef std::vector<const TMVA::Event*> TMVA::DecisionTree::EventConstList |
Definition at line 82 of file DecisionTree.h.
typedef std::vector<TMVA::Event*> TMVA::DecisionTree::EventList |
Definition at line 81 of file DecisionTree.h.
Enumerator | |
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kExpectedErrorPruning | |
kCostComplexityPruning | |
kNoPruning |
Definition at line 147 of file DecisionTree.h.
TMVA::DecisionTree::DecisionTree | ( | void | ) |
Definition at line 114 of file DecisionTree.cxx.
TMVA::DecisionTree::DecisionTree | ( | TMVA::SeparationBase * | sepType, |
Float_t | minSize, | ||
Int_t | nCuts, | ||
DataSetInfo * | dataInfo = NULL , |
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UInt_t | cls = 0 , |
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Bool_t | randomisedTree = kFALSE , |
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Int_t | useNvars = 0 , |
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Bool_t | usePoissonNvars = kFALSE , |
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UInt_t | nMaxDepth = 9999999 , |
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Int_t | iSeed = fgRandomSeed , |
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Float_t | purityLimit = 0.5 , |
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Int_t | treeID = 0 |
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) |
constructor specifying the separation type, the min number of events in a no that is still subjected to further splitting, the number of bins in the grid used in applying the cut for the node splitting.
Definition at line 149 of file DecisionTree.cxx.
TMVA::DecisionTree::DecisionTree | ( | const DecisionTree & | d | ) |
copy constructor that creates a true copy, i.e.
a completely independent tree the node copy will recursively copy all the nodes
Definition at line 199 of file DecisionTree.cxx.
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destructor
Definition at line 234 of file DecisionTree.cxx.
void TMVA::DecisionTree::ApplyValidationSample | ( | const EventConstList * | validationSample | ) | const |
run the validation sample through the (pruned) tree and fill in the nodes the variables NSValidation and NBValidadtion (i.e.
how many of the Signal and Background events from the validation sample. This is then later used when asking for the "tree quality" ..
Definition at line 686 of file DecisionTree.cxx.
UInt_t TMVA::DecisionTree::BuildTree | ( | const EventConstList & | eventSample, |
DecisionTreeNode * | node = NULL |
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) |
building the decision tree by recursively calling the splitting of one (root-) node into two daughter nodes (returns the number of nodes)
Definition at line 293 of file DecisionTree.cxx.
Double_t TMVA::DecisionTree::CheckEvent | ( | const TMVA::Event * | e, |
Bool_t | UseYesNoLeaf = kFALSE |
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) | const |
the event e is put into the decision tree (starting at the root node) and the output is NodeType (signal) or (background) of the final node (basket) in which the given events ends up.
I.e. the result of the classification if the event for this decision tree.
Definition at line 1712 of file DecisionTree.cxx.
void TMVA::DecisionTree::CheckEventWithPrunedTree | ( | const TMVA::Event * | e | ) | const |
pass a single validation event throught a pruned decision tree on the way down the tree, fill in all the "intermediate" information that would normally be there from training.
Definition at line 742 of file DecisionTree.cxx.
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Implements TMVA::BinaryTree.
Definition at line 106 of file DecisionTree.h.
UInt_t TMVA::DecisionTree::CleanTree | ( | DecisionTreeNode * | node = NULL | ) |
remove those last splits that result in two leaf nodes that are both of the type (i.e.
both signal or both background) this of course is only a reasonable thing to do when you use "YesOrNo" leafs, while it might loose s.th. if you use the purity information in the nodes. –> hence I don't call it automatically in the tree building
Definition at line 590 of file DecisionTree.cxx.
void TMVA::DecisionTree::ClearTree | ( | ) |
clear the tree nodes (their S/N, Nevents etc), just keep the structure of the tree
Definition at line 576 of file DecisionTree.cxx.
UInt_t TMVA::DecisionTree::CountLeafNodes | ( | TMVA::Node * | n = NULL | ) |
return the number of terminal nodes in the sub-tree below Node n
Definition at line 790 of file DecisionTree.cxx.
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re-create a new tree (decision tree or search tree) from XML
Definition at line 279 of file DecisionTree.cxx.
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Implements TMVA::BinaryTree.
Definition at line 103 of file DecisionTree.h.
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Implements TMVA::BinaryTree.
Definition at line 104 of file DecisionTree.h.
descend a tree to find all its leaf nodes
Definition at line 819 of file DecisionTree.cxx.
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Definition at line 196 of file DecisionTree.h.
void TMVA::DecisionTree::FillEvent | ( | const TMVA::Event & | event, |
TMVA::DecisionTreeNode * | node | ||
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fill the existing the decision tree structure by filling event in from the top node and see where they happen to end up
Definition at line 542 of file DecisionTree.cxx.
Definition at line 528 of file DecisionTree.cxx.
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Definition at line 198 of file DecisionTree.h.
TMVA::DecisionTreeNode * TMVA::DecisionTree::GetEventNode | ( | const TMVA::Event & | e | ) | const |
get the pointer to the leaf node where a particular event ends up in...
(used in gradient boosting)
Definition at line 1695 of file DecisionTree.cxx.
std::vector< Double_t > TMVA::DecisionTree::GetFisherCoefficients | ( | const EventConstList & | eventSample, |
UInt_t | nFisherVars, | ||
UInt_t * | mapVarInFisher | ||
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calculate the fisher coefficients for the event sample and the variables used
Definition at line 1369 of file DecisionTree.cxx.
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Definition at line 188 of file DecisionTree.h.
TMVA::Node * TMVA::DecisionTree::GetNode | ( | ULong_t | sequence, |
UInt_t | depth | ||
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retrieve node from the tree.
Its position (up to a maximal tree depth of 64) is coded as a sequence of left-right moves starting from the root, coded as 0-1 bit patterns stored in the "long-integer" (i.e. 0:left ; 1:right
Definition at line 890 of file DecisionTree.cxx.
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Definition at line 170 of file DecisionTree.h.
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Definition at line 155 of file DecisionTree.h.
void TMVA::DecisionTree::GetRandomisedVariables | ( | Bool_t * | useVariable, |
UInt_t * | variableMap, | ||
UInt_t & | nVars | ||
) |
Definition at line 907 of file DecisionTree.cxx.
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Reimplemented from TMVA::BinaryTree.
Definition at line 102 of file DecisionTree.h.
Double_t TMVA::DecisionTree::GetSumWeights | ( | const EventConstList * | validationSample | ) | const |
calculate the normalization factor for a pruning validation sample
Definition at line 775 of file DecisionTree.cxx.
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Definition at line 194 of file DecisionTree.h.
vector< Double_t > TMVA::DecisionTree::GetVariableImportance | ( | ) |
Return the relative variable importance, normalized to all variables together having the importance 1.
The importance in evaluated as the total separation-gain that this variable had in the decision trees (weighted by the number of events)
Definition at line 1765 of file DecisionTree.cxx.
returns the relative improtance of variable ivar
Definition at line 1786 of file DecisionTree.cxx.
void TMVA::DecisionTree::PruneNode | ( | TMVA::DecisionTreeNode * | node | ) |
prune away the subtree below the node
Definition at line 853 of file DecisionTree.cxx.
void TMVA::DecisionTree::PruneNodeInPlace | ( | TMVA::DecisionTreeNode * | node | ) |
prune a node temporaily (without actually deleting its decendants which allows testing the pruned tree quality for many different pruning stages without "touching" the tree.
Definition at line 876 of file DecisionTree.cxx.
Double_t TMVA::DecisionTree::PruneTree | ( | const EventConstList * | validationSample = NULL | ) |
prune (get rid of internal nodes) the Decision tree to avoid overtraining serveral different pruning methods can be applied as selected by the variable "fPruneMethod".
Definition at line 617 of file DecisionTree.cxx.
calculates the purity S/(S+B) of a given event sample
Definition at line 1742 of file DecisionTree.cxx.
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Definition at line 197 of file DecisionTree.h.
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descend a tree to find all its leaf nodes, fill max depth reached in the tree at the same time.
Definition at line 246 of file DecisionTree.cxx.
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Definition at line 199 of file DecisionTree.h.
Double_t TMVA::DecisionTree::TestPrunedTreeQuality | ( | const DecisionTreeNode * | dt = NULL , |
Int_t | mode = 0 |
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) | const |
return the misclassification rate of a pruned tree a "pruned tree" may have set the variable "IsTerminal" to "arbitrary" at any node, hence this tree quality testing will stop there, hence test the pruned tree (while the full tree is still in place for normal/later use)
Definition at line 700 of file DecisionTree.cxx.
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Definition at line 116 of file DecisionTree.h.
Double_t TMVA::DecisionTree::TrainNodeFast | ( | const EventConstList & | eventSample, |
TMVA::DecisionTreeNode * | node | ||
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Decide how to split a node using one of the variables that gives the best separation of signal/background.
In order to do this, for each variable a scan of the different cut values in a grid (grid = fNCuts) is performed and the resulting separation gains are compared. in addition to the individual variables, one can also ask for a fisher discriminant being built out of (some) of the variables and used as a possible multivariate split.
Definition at line 940 of file DecisionTree.cxx.
Double_t TMVA::DecisionTree::TrainNodeFull | ( | const EventConstList & | eventSample, |
TMVA::DecisionTreeNode * | node | ||
) |
Definition at line 1561 of file DecisionTree.cxx.
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