TMVARegressionApplication.C File Reference

Detailed Description

This macro provides a simple example on how to use the trained regression MVAs within an analysis module

• Project : TMVA - a Root-integrated toolkit for multivariate data analysis
• Package : TMVA
• Exectuable: TMVARegressionApplication

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Processing /mnt/build/workspace/root-makedoc-v614/rootspi/rdoc/src/v6-14-00-patches/tutorials/tmva/TMVARegressionApplication.C...

==> Start TMVARegressionApplication
                         : Booking "BDTG method" of type "BDT" from dataset/weights/TMVARegression_BDTG.weights.xml.
                         : Reading weight file: dataset/weights/TMVARegression_BDTG.weights.xml
<HEADER> DataSetInfo              : [Default] : Added class "Regression"
                         : Booked classifier "BDTG" of type: "BDT"
                         : Booking "DNN_CPU method" of type "DNN" from dataset/weights/TMVARegression_DNN_CPU.weights.xml.
                         : Reading weight file: dataset/weights/TMVARegression_DNN_CPU.weights.xml
                         : Booked classifier "DNN_CPU" of type: "DNN"
                         : Booking "KNN method" of type "KNN" from dataset/weights/TMVARegression_KNN.weights.xml.
                         : Reading weight file: dataset/weights/TMVARegression_KNN.weights.xml
                         : Creating kd-tree with 1000 events
                         : Computing scale factor for 1d distributions: (ifrac, bottom, top) = (80%, 10%, 90%)
<HEADER> ModulekNN                : Optimizing tree for 2 variables with 1000 values
                         : <Fill> Class 1 has     1000 events
                         : Booked classifier "KNN" of type: "KNN"
                         : Booking "LD method" of type "LD" from dataset/weights/TMVARegression_LD.weights.xml.
                         : Reading weight file: dataset/weights/TMVARegression_LD.weights.xml
                         : Booked classifier "LD" of type: "LD"
                         : Booking "PDEFoam method" of type "PDEFoam" from dataset/weights/TMVARegression_PDEFoam.weights.xml.
                         : Reading weight file: dataset/weights/TMVARegression_PDEFoam.weights.xml
                         : Read foams from file: dataset/weights/TMVARegression_PDEFoam.weights_foams.root
                         : Booked classifier "PDEFoam" of type: "PDEFoam"
--- TMVARegressionApp        : Using input file: ./files/tmva_reg_example.root
--- Select signal sample
--- Processing: 10000 events
--- ... Processing event: 0
--- ... Processing event: 1000
--- ... Processing event: 2000
--- ... Processing event: 3000
--- ... Processing event: 4000
--- ... Processing event: 5000
--- ... Processing event: 6000
--- ... Processing event: 7000
--- ... Processing event: 8000
--- ... Processing event: 9000
--- End of event loop: Real time 0:00:03, CP time 3.120
--- Created root file: "TMVARegApp.root" containing the MVA output histograms
==> TMVARegressionApplication is done!

#include <cstdlib>
#include <vector>
#include <iostream>
#include <map>
#include <string>

#include "TFile.h"
#include "TTree.h"
#include "TString.h"
#include "TSystem.h"
#include "TROOT.h"
#include "TStopwatch.h"

#include "TMVA/Tools.h"
#include "TMVA/Reader.h"

using namespace TMVA;

void TMVARegressionApplication( TString myMethodList = "" ) 
{
   //---------------------------------------------------------------
   // This loads the library
   TMVA::Tools::Instance();

   // Default MVA methods to be trained + tested
   std::map<std::string,int> Use;

   // --- Mutidimensional likelihood and Nearest-Neighbour methods
   Use["PDERS"]           = 0;
   Use["PDEFoam"]         = 1; 
   Use["KNN"]             = 1;
   // 
   // --- Linear Discriminant Analysis
   Use["LD"]              = 1;
   // 
   // --- Function Discriminant analysis
   Use["FDA_GA"]          = 0;
   Use["FDA_MC"]          = 0;
   Use["FDA_MT"]          = 0;
   Use["FDA_GAMT"]        = 0;
   // 
   // --- Neural Network
   Use["MLP"] = 0;
#ifdef R__HAS_TMVACPU
   Use["DNN_CPU"] = 1;
#else
   Use["DNN_CPU"] = 0;
#endif

   // 
   // --- Support Vector Machine 
   Use["SVM"]             = 0;
   // 
   // --- Boosted Decision Trees
   Use["BDT"]             = 0;
   Use["BDTG"]            = 1;
   // ---------------------------------------------------------------

   std::cout << std::endl;
   std::cout << "==> Start TMVARegressionApplication" << std::endl;

   // Select methods (don't look at this code - not of interest)
   if (myMethodList != "") {
      for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) it->second = 0;

      std::vector<TString> mlist = gTools().SplitString( myMethodList, ',' );
      for (UInt_t i=0; i<mlist.size(); i++) {
         std::string regMethod(mlist[i]);

         if (Use.find(regMethod) == Use.end()) {
            std::cout << "Method \"" << regMethod << "\" not known in TMVA under this name. Choose among the following:" << std::endl;
            for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) std::cout << it->first << " ";
            std::cout << std::endl;
            return;
         }
         Use[regMethod] = 1;
      }
   }

   // --------------------------------------------------------------------------------------------------

   // --- Create the Reader object

   TMVA::Reader *reader = new TMVA::Reader( "!Color:!Silent" );    

   // Create a set of variables and declare them to the reader
   // - the variable names MUST corresponds in name and type to those given in the weight file(s) used
   Float_t var1, var2;
   reader->AddVariable( "var1", &var1 );
   reader->AddVariable( "var2", &var2 );

   // Spectator variables declared in the training have to be added to the reader, too
   Float_t spec1,spec2;
   reader->AddSpectator( "spec1:=var1*2",  &spec1 );
   reader->AddSpectator( "spec2:=var1*3",  &spec2 );

   // --- Book the MVA methods

   TString dir    = "dataset/weights/";
   TString prefix = "TMVARegression";

   // Book method(s)
   for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) {
      if (it->second) {
         TString methodName = it->first + " method";
         TString weightfile = dir + prefix + "_" + TString(it->first) + ".weights.xml";
         reader->BookMVA( methodName, weightfile ); 
      }
   }
   
   // Book output histograms
   TH1* hists[100];
   Int_t nhists = -1;
   for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) {
      TH1* h = new TH1F( it->first.c_str(), TString(it->first) + " method", 100, -100, 600 );
      if (it->second) hists[++nhists] = h;
   }
   nhists++;
   
   // Prepare input tree (this must be replaced by your data source)
   // in this example, there is a toy tree with signal and one with background events
   // we'll later on use only the "signal" events for the test in this example.
   //
   TFile *input(0);
   TString fname = "./tmva_reg_example.root";
   if (!gSystem->AccessPathName( fname )) {
      input = TFile::Open( fname ); // check if file in local directory exists
   }
   else {
      TFile::SetCacheFileDir(".");
      input = TFile::Open("http://root.cern.ch/files/tmva_reg_example.root", "CACHEREAD"); // if not: download from ROOT server
   }
   if (!input) {
      std::cout << "ERROR: could not open data file" << std::endl;
      exit(1);
   }
   std::cout << "--- TMVARegressionApp        : Using input file: " << input->GetName() << std::endl;

   // --- Event loop

   // Prepare the tree
   // - here the variable names have to corresponds to your tree
   // - you can use the same variables as above which is slightly faster,
   //   but of course you can use different ones and copy the values inside the event loop
   //
   TTree* theTree = (TTree*)input->Get("TreeR");
   std::cout << "--- Select signal sample" << std::endl;
   theTree->SetBranchAddress( "var1", &var1 );
   theTree->SetBranchAddress( "var2", &var2 );

   std::cout << "--- Processing: " << theTree->GetEntries() << " events" << std::endl;
   TStopwatch sw;
   sw.Start();
   for (Long64_t ievt=0; ievt<theTree->GetEntries();ievt++) {

      if (ievt%1000 == 0) {
         std::cout << "--- ... Processing event: " << ievt << std::endl;
      }

      theTree->GetEntry(ievt);

      // Retrieve the MVA target values (regression outputs) and fill into histograms
      // NOTE: EvaluateRegression(..) returns a vector for multi-target regression

      for (Int_t ih=0; ih<nhists; ih++) {
         TString title = hists[ih]->GetTitle();
         Float_t val = (reader->EvaluateRegression( title ))[0];
         hists[ih]->Fill( val );    
      }
   }
   sw.Stop();
   std::cout << "--- End of event loop: "; sw.Print();

   // --- Write histograms

   TFile *target  = new TFile( "TMVARegApp.root","RECREATE" );
   for (Int_t ih=0; ih<nhists; ih++) hists[ih]->Write();
   target->Close();

   std::cout << "--- Created root file: \"" << target->GetName() 
             << "\" containing the MVA output histograms" << std::endl;
  
   delete reader;
    
   std::cout << "==> TMVARegressionApplication is done!" << std::endl << std::endl;
}

int main( int argc, char** argv )
{
   // Select methods (don't look at this code - not of interest)
   TString methodList; 
   for (int i=1; i<argc; i++) {
      TString regMethod(argv[i]);
      if(regMethod=="-b" || regMethod=="--batch") continue;
      if (!methodList.IsNull()) methodList += TString(","); 
      methodList += regMethod;
   }
   TMVARegressionApplication(methodList);
   return 0;
}

Author

Andreas Hoecker

Definition in file TMVARegressionApplication.C.