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RPageStorageFile.hxx
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1/// \file ROOT/RPageStorageFile.hxx
2/// \ingroup NTuple ROOT7
3/// \author Jakob Blomer <jblomer@cern.ch>
4/// \date 2019-11-21
5/// \warning This is part of the ROOT 7 prototype! It will change without notice. It might trigger earthquakes. Feedback
6/// is welcome!
7
8/*************************************************************************
9 * Copyright (C) 1995-2019, Rene Brun and Fons Rademakers. *
10 * All rights reserved. *
11 * *
12 * For the licensing terms see $ROOTSYS/LICENSE. *
13 * For the list of contributors see $ROOTSYS/README/CREDITS. *
14 *************************************************************************/
15
16#ifndef ROOT7_RPageStorageFile
17#define ROOT7_RPageStorageFile
18
19#include <ROOT/RMiniFile.hxx>
21#include <ROOT/RNTupleZip.hxx>
22#include <ROOT/RPageStorage.hxx>
23#include <ROOT/RRawFile.hxx>
24#include <ROOT/RStringView.hxx>
25
26#include <array>
27#include <cstdio>
28#include <memory>
29#include <string>
30#include <utility>
31
32class TFile;
33
34namespace ROOT {
35
36namespace Internal {
37class RRawFile;
38}
39
40namespace Experimental {
41class RNTuple; // for making RPageSourceFile a friend of RNTuple
42
43namespace Detail {
44
45class RClusterPool;
46class RPageAllocatorHeap;
47class RPagePool;
48
49
50// clang-format off
51/**
52\class ROOT::Experimental::Detail::RPageSinkFile
53\ingroup NTuple
54\brief Storage provider that write ntuple pages into a file
55
56The written file can be either in ROOT format or in RNTuple bare format.
57*/
58// clang-format on
59class RPageSinkFile : public RPageSink {
60private:
61 std::unique_ptr<RPageAllocatorHeap> fPageAllocator;
62
63 std::unique_ptr<Internal::RNTupleFileWriter> fWriter;
64 /// Number of bytes committed to storage in the current cluster
65 std::uint64_t fNBytesCurrentCluster = 0;
66 RPageSinkFile(std::string_view ntupleName, const RNTupleWriteOptions &options);
67
69 std::size_t bytesPacked);
70
71protected:
72 void CreateImpl(const RNTupleModel &model, unsigned char *serializedHeader, std::uint32_t length) final;
73 RNTupleLocator CommitPageImpl(ColumnHandle_t columnHandle, const RPage &page) final;
75 CommitSealedPageImpl(DescriptorId_t physicalColumnId, const RPageStorage::RSealedPage &sealedPage) final;
76 std::uint64_t CommitClusterImpl(NTupleSize_t nEntries) final;
77 RNTupleLocator CommitClusterGroupImpl(unsigned char *serializedPageList, std::uint32_t length) final;
78 void CommitDatasetImpl(unsigned char *serializedFooter, std::uint32_t length) final;
79
80public:
81 RPageSinkFile(std::string_view ntupleName, std::string_view path, const RNTupleWriteOptions &options);
82 RPageSinkFile(std::string_view ntupleName, std::string_view path, const RNTupleWriteOptions &options,
83 std::unique_ptr<TFile> &file);
84 RPageSinkFile(std::string_view ntupleName, TFile &file, const RNTupleWriteOptions &options);
85 RPageSinkFile(const RPageSinkFile&) = delete;
89 ~RPageSinkFile() override;
90
91 RPage ReservePage(ColumnHandle_t columnHandle, std::size_t nElements) final;
92 void ReleasePage(RPage &page) final;
93};
94
95// clang-format off
96/**
97\class ROOT::Experimental::Detail::RPageSourceFile
98\ingroup NTuple
99\brief Storage provider that reads ntuple pages from a file
100*/
101// clang-format on
104
105private:
106 /// Summarizes cluster-level information that are necessary to populate a certain page.
107 /// Used by PopulatePageFromCluster().
110 /// Location of the page on disk
112 /// The first element number of the page's column in the given cluster
113 std::uint64_t fColumnOffset = 0;
114 };
115
116 /// Populated pages might be shared; the page pool might, at some point, be used by multiple page sources
117 std::shared_ptr<RPagePool> fPagePool;
118 /// The last cluster from which a page got populated. Points into fClusterPool->fPool
120 /// An RRawFile is used to request the necessary byte ranges from a local or a remote file
121 std::unique_ptr<ROOT::Internal::RRawFile> fFile;
122 /// Takes the fFile to read ntuple blobs from it
124 /// The descriptor is created from the header and footer either in AttachImpl or in CreateFromAnchor
126 /// The cluster pool asynchronously preloads the next few clusters
127 std::unique_ptr<RClusterPool> fClusterPool;
128
129 /// Deserialized header and footer into a minimal descriptor held by fDescriptorBuilder
131
132 RPageSourceFile(std::string_view ntupleName, const RNTupleReadOptions &options);
133 /// Used from the RNTuple class to build a datasource if the anchor is already available
134 static std::unique_ptr<RPageSourceFile> CreateFromAnchor(const Internal::RFileNTupleAnchor &anchor,
135 std::string_view path, const RNTupleReadOptions &options);
136 RPage PopulatePageFromCluster(ColumnHandle_t columnHandle, const RClusterInfo &clusterInfo,
137 ClusterSize_t::ValueType idxInCluster);
138
139 /// Helper function for LoadClusters: it prepares the memory buffer (page map) and the
140 /// read requests for a given cluster and columns. The reead requests are appended to
141 /// the provided vector. This way, requests can be collected for multiple clusters before
142 /// sending them to RRawFile::ReadV().
143 std::unique_ptr<RCluster> PrepareSingleCluster(
144 const RCluster::RKey &clusterKey,
145 std::vector<ROOT::Internal::RRawFile::RIOVec> &readRequests);
146
147protected:
149 void UnzipClusterImpl(RCluster *cluster) final;
150
151public:
152 RPageSourceFile(std::string_view ntupleName, std::string_view path, const RNTupleReadOptions &options);
153 /// The cloned page source creates a new raw file and reader and opens its own file descriptor to the data.
154 /// The meta-data (header and footer) is reread and parsed by the clone.
155 std::unique_ptr<RPageSource> Clone() const final;
156
158 RPageSourceFile& operator=(const RPageSourceFile&) = delete;
160 RPageSourceFile &operator=(RPageSourceFile &&) = delete;
161 ~RPageSourceFile() override;
162
163 RPage PopulatePage(ColumnHandle_t columnHandle, NTupleSize_t globalIndex) final;
164 RPage PopulatePage(ColumnHandle_t columnHandle, const RClusterIndex &clusterIndex) final;
165 void ReleasePage(RPage &page) final;
166
167 void
168 LoadSealedPage(DescriptorId_t physicalColumnId, const RClusterIndex &clusterIndex, RSealedPage &sealedPage) final;
169
170 std::vector<std::unique_ptr<RCluster>> LoadClusters(std::span<RCluster::RKey> clusterKeys) final;
171};
172
173
174} // namespace Detail
175
176} // namespace Experimental
177} // namespace ROOT
178
179#endif
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char Pixmap_t Pixmap_t PictureAttributes_t attr const char char ret_data h unsigned char height h length
An in-memory subset of the packed and compressed pages of a cluster.
Definition RCluster.hxx:155
Storage provider that write ntuple pages into a file.
RPage ReservePage(ColumnHandle_t columnHandle, std::size_t nElements) final
Get a new, empty page for the given column that can be filled with up to nElements.
std::uint64_t fNBytesCurrentCluster
Number of bytes committed to storage in the current cluster.
RNTupleLocator CommitPageImpl(ColumnHandle_t columnHandle, const RPage &page) final
RPageSinkFile & operator=(const RPageSinkFile &)=delete
std::uint64_t CommitClusterImpl(NTupleSize_t nEntries) final
Returns the number of bytes written to storage (excluding metadata)
void CreateImpl(const RNTupleModel &model, unsigned char *serializedHeader, std::uint32_t length) final
RPageSinkFile(const RPageSinkFile &)=delete
RPageSinkFile & operator=(RPageSinkFile &&)=default
void ReleasePage(RPage &page) final
Every page store needs to be able to free pages it handed out.
std::unique_ptr< RPageAllocatorHeap > fPageAllocator
void CommitDatasetImpl(unsigned char *serializedFooter, std::uint32_t length) final
std::unique_ptr< Internal::RNTupleFileWriter > fWriter
RPageSinkFile(RPageSinkFile &&)=default
RNTupleLocator CommitSealedPageImpl(DescriptorId_t physicalColumnId, const RPageStorage::RSealedPage &sealedPage) final
RNTupleLocator WriteSealedPage(const RPageStorage::RSealedPage &sealedPage, std::size_t bytesPacked)
RNTupleLocator CommitClusterGroupImpl(unsigned char *serializedPageList, std::uint32_t length) final
Returns the locator of the page list envelope of the given buffer that contains the serialized page l...
Abstract interface to write data into an ntuple.
Storage provider that reads ntuple pages from a file.
void LoadSealedPage(DescriptorId_t physicalColumnId, const RClusterIndex &clusterIndex, RSealedPage &sealedPage) final
Read the packed and compressed bytes of a page into the memory buffer provided by selaedPage.
std::vector< std::unique_ptr< RCluster > > LoadClusters(std::span< RCluster::RKey > clusterKeys) final
Populates all the pages of the given cluster ids and columns; it is possible that some columns do not...
RCluster * fCurrentCluster
The last cluster from which a page got populated. Points into fClusterPool->fPool.
void InitDescriptor(const Internal::RFileNTupleAnchor &anchor)
Deserialized header and footer into a minimal descriptor held by fDescriptorBuilder.
Internal::RMiniFileReader fReader
Takes the fFile to read ntuple blobs from it.
std::unique_ptr< RClusterPool > fClusterPool
The cluster pool asynchronously preloads the next few clusters.
void ReleasePage(RPage &page) final
Every page store needs to be able to free pages it handed out.
static std::unique_ptr< RPageSourceFile > CreateFromAnchor(const Internal::RFileNTupleAnchor &anchor, std::string_view path, const RNTupleReadOptions &options)
Used from the RNTuple class to build a datasource if the anchor is already available.
std::unique_ptr< RCluster > PrepareSingleCluster(const RCluster::RKey &clusterKey, std::vector< ROOT::Internal::RRawFile::RIOVec > &readRequests)
Helper function for LoadClusters: it prepares the memory buffer (page map) and the read requests for ...
std::unique_ptr< RPageSource > Clone() const final
The cloned page source creates a new raw file and reader and opens its own file descriptor to the dat...
void UnzipClusterImpl(RCluster *cluster) final
std::shared_ptr< RPagePool > fPagePool
Populated pages might be shared; the page pool might, at some point, be used by multiple page sources...
RNTupleDescriptorBuilder fDescriptorBuilder
The descriptor is created from the header and footer either in AttachImpl or in CreateFromAnchor.
std::unique_ptr< ROOT::Internal::RRawFile > fFile
An RRawFile is used to request the necessary byte ranges from a local or a remote file.
RPage PopulatePage(ColumnHandle_t columnHandle, NTupleSize_t globalIndex) final
Allocates and fills a page that contains the index-th element.
RPage PopulatePageFromCluster(ColumnHandle_t columnHandle, const RClusterInfo &clusterInfo, ClusterSize_t::ValueType idxInCluster)
Abstract interface to read data from an ntuple.
A page is a slice of a column that is mapped into memory.
Definition RPage.hxx:42
Read RNTuple data blocks from a TFile container, provided by a RRawFile.
Addresses a column element or field item relative to a particular cluster, instead of a global NTuple...
A helper class for piece-wise construction of an RNTupleDescriptor.
The on-storage meta-data of an ntuple.
The RNTupleModel encapulates the schema of an ntuple.
Common user-tunable settings for reading ntuples.
Common user-tunable settings for storing ntuples.
Representation of an RNTuple data set in a ROOT file.
Definition RNTuple.hxx:512
A ROOT file is composed of a header, followed by consecutive data records (TKey instances) with a wel...
Definition TFile.h:53
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
This file contains a specialised ROOT message handler to test for diagnostic in unit tests.
Definition file.py:1
The identifiers that specifies the content of a (partial) cluster.
Definition RCluster.hxx:159
Summarizes cluster-level information that are necessary to populate a certain page.
RClusterDescriptor::RPageRange::RPageInfoExtended fPageInfo
Location of the page on disk.
std::uint64_t fColumnOffset
The first element number of the page's column in the given cluster.
A sealed page contains the bytes of a page as written to storage (packed & compressed).
Entry point for an RNTuple in a ROOT file.
Definition RMiniFile.hxx:65
Generic information about the physical location of data.