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FitAwmi.C File Reference
Tutorials » Legacy tutorials » Spectrum tutorials

Detailed Description

This macro fits the source spectrum using the AWMI algorithm from the "TSpectrumFit" class ("TSpectrum" class is used to find peaks).

To try this macro, in a ROOT (5 or 6) prompt, do:

root > .x FitAwmi.C

or:

root > .x FitAwmi.C++
root > FitAwmi(); // re-run with another random set of peaks
created -9.82 53.1923 8
created -9.46 33.2452 5
created -9.1 59.8413 9
created -8.74 33.2452 5
created -8.38 59.8413 9
created -8.02 66.4904 10
created -7.66 26.5962 4
created -7.3 19.9471 3
created -6.94 46.5433 7
created -6.58 46.5433 7
created -6.22 26.5962 4
created -5.86 66.4904 10
created -5.5 33.2452 5
created -5.14 59.8413 9
created -4.78 33.2452 5
created -4.42 26.5962 4
created -4.06 19.9471 3
created -3.7 26.5962 4
created -3.34 46.5433 7
created -2.98 39.8942 6
created -2.62 33.2452 5
created -2.26 53.1923 8
created -1.9 46.5433 7
created -1.54 39.8942 6
created -1.18 59.8413 9
created -0.82 53.1923 8
created -0.46 6.64904 1
created -0.1 53.1923 8
created 0.26 13.2981 2
created 0.62 33.2452 5
created 0.98 26.5962 4
created 1.34 66.4904 10
created 1.7 53.1923 8
created 2.06 66.4904 10
created 2.42 59.8413 9
created 2.78 59.8413 9
created 3.14 59.8413 9
created 3.5 39.8942 6
created 3.86 19.9471 3
created 4.22 19.9471 3
created 4.58 66.4904 10
created 4.94 19.9471 3
created 5.3 19.9471 3
created 5.66 13.2981 2
created 6.02 19.9471 3
created 6.38 46.5433 7
created 6.74 19.9471 3
created 7.1 59.8413 9
created 7.46 33.2452 5
created 7.82 26.5962 4
created 8.18 13.2981 2
created 8.54 19.9471 3
created 8.9 59.8413 9
created 9.26 33.2452 5
created 9.62 53.1923 8
the total number of created peaks = 55 with sigma = 0.06
the total number of found peaks = 55 with sigma = 0.0600004 (+-1.41794e-05)
fit chi^2 = 3.04895e-06
found -8.02 (+-0.000141929) 66.4905 (+-0.155063) 10.0001 (+-0.00078217)
found -5.86 (+-0.000141637) 66.4903 (+-0.155023) 10.0001 (+-0.000781971)
found 1.34 (+-0.000141865) 66.4905 (+-0.155054) 10.0001 (+-0.000782126)
found 2.06 (+-0.000142255) 66.4907 (+-0.155106) 10.0001 (+-0.000782388)
found 4.58 (+-0.000141319) 66.4902 (+-0.154983) 10 (+-0.000781766)
found 2.42 (+-0.000150209) 59.8418 (+-0.147179) 9.00013 (+-0.000742402)
found 2.78 (+-0.000150144) 59.8417 (+-0.147171) 9.00012 (+-0.00074236)
found 3.14 (+-0.000149914) 59.8416 (+-0.147142) 9.0001 (+-0.000742217)
found -9.1 (+-0.0001495) 59.8414 (+-0.147092) 9.00007 (+-0.000741962)
found -8.38 (+-0.000149886) 59.8416 (+-0.14714) 9.0001 (+-0.000742203)
found -5.14 (+-0.0001495) 59.8414 (+-0.147092) 9.00007 (+-0.000741962)
found -1.18 (+-0.000149843) 59.8416 (+-0.147134) 9.00009 (+-0.000742173)
found 7.1 (+-0.000149272) 59.8413 (+-0.147065) 9.00005 (+-0.000741829)
found 8.9 (+-0.000149272) 59.8413 (+-0.147065) 9.00005 (+-0.000741829)
found -0.820001 (+-0.000158393) 53.1924 (+-0.138667) 8.00007 (+-0.000699465)
found 1.7 (+-0.000159553) 53.1928 (+-0.138788) 8.00013 (+-0.000700075)
found -9.82 (+-0.000158575) 53.1922 (+-0.138669) 8.00003 (+-0.000699474)
found -2.26 (+-0.000158888) 53.1925 (+-0.138714) 8.00008 (+-0.000699703)
found -0.0999999 (+-0.000157626) 53.1921 (+-0.138584) 8.00002 (+-0.000699049)
found 9.62 (+-0.000157424) 53.1925 (+-0.138579) 8.00009 (+-0.000699022)
found -1.9 (+-0.000170238) 46.5436 (+-0.129792) 7.00009 (+-0.000654696)
found -6.94 (+-0.000169743) 46.5434 (+-0.129745) 7.00007 (+-0.000654461)
found -6.58 (+-0.000169896) 46.5434 (+-0.129759) 7.00007 (+-0.000654532)
found -3.34 (+-0.000169793) 46.5434 (+-0.129749) 7.00007 (+-0.000654481)
found 6.38 (+-0.000169243) 46.5432 (+-0.129698) 7.00004 (+-0.000654223)
found 3.5 (+-0.000183754) 39.8945 (+-0.120155) 6.00008 (+-0.000606088)
found -2.98 (+-0.000183874) 39.8945 (+-0.120163) 6.00008 (+-0.00060613)
found -1.54 (+-0.000184334) 39.8947 (+-0.120202) 6.00011 (+-0.000606326)
found -9.46 (+-0.000202398) 33.2457 (+-0.109763) 5.00011 (+-0.000553668)
found -8.74 (+-0.000202516) 33.2458 (+-0.109772) 5.00012 (+-0.000553711)
found -5.5 (+-0.000202625) 33.2458 (+-0.10978) 5.00013 (+-0.000553752)
found -4.78 (+-0.000201798) 33.2455 (+-0.109721) 5.00009 (+-0.000553456)
found 7.46 (+-0.000201798) 33.2455 (+-0.109721) 5.00009 (+-0.000553456)
found 9.26 (+-0.000202398) 33.2457 (+-0.109763) 5.00012 (+-0.000553668)
found -2.62 (+-0.000202014) 33.2456 (+-0.109735) 5.00009 (+-0.000553529)
found 0.62 (+-0.000200627) 33.2452 (+-0.10964) 5.00004 (+-0.000553047)
found -7.66 (+-0.000225954) 26.5966 (+-0.098158) 4.00009 (+-0.00049513)
found -6.22 (+-0.000226783) 26.5967 (+-0.0982045) 4.00011 (+-0.000495364)
found -4.42 (+-0.000225178) 26.5963 (+-0.098112) 4.00005 (+-0.000494898)
found 0.980001 (+-0.000226423) 26.5966 (+-0.0981839) 4.0001 (+-0.00049526)
found 7.82 (+-0.000224866) 26.5963 (+-0.0980955) 4.00005 (+-0.000494815)
found -3.7 (+-0.000225531) 26.5964 (+-0.0981326) 4.00007 (+-0.000495002)
found -7.3 (+-0.000261427) 19.9475 (+-0.0850284) 3.00007 (+-0.000428901)
found -4.06 (+-0.000260699) 19.9473 (+-0.0849963) 3.00005 (+-0.000428739)
found 3.86 (+-0.000260889) 19.9474 (+-0.0850051) 3.00006 (+-0.000428784)
found 4.94 (+-0.000261641) 19.9476 (+-0.0850397) 3.00009 (+-0.000428958)
found 6.74 (+-0.000262539) 19.9477 (+-0.0850777) 3.00011 (+-0.00042915)
found 4.22 (+-0.000261641) 19.9476 (+-0.0850397) 3.00009 (+-0.000428958)
found 5.3 (+-0.000259658) 19.9472 (+-0.0849527) 3.00003 (+-0.000428519)
found 6.02 (+-0.000260699) 19.9474 (+-0.0849984) 3.00006 (+-0.00042875)
found 8.54 (+-0.000261071) 19.9475 (+-0.0850155) 3.00007 (+-0.000428836)
found 0.259999 (+-0.000322245) 13.2986 (+-0.0694874) 2.00009 (+-0.000350509)
found 5.66 (+-0.000319637) 13.2983 (+-0.0694092) 2.00004 (+-0.000350114)
found 8.18 (+-0.000320093) 13.2983 (+-0.0694225) 2.00005 (+-0.000350182)
found -0.46 (+-0.000461713) 6.64971 (+-0.049231) 1.00011 (+-0.000248331)
#include "TROOT.h"
#include "TMath.h"
#include "TRandom.h"
#include "TH1.h"
#include "TF1.h"
#include "TCanvas.h"
#include "TSpectrum.h"
#include "TSpectrumFit.h"
#include "TPolyMarker.h"
#include "TList.h"
#include <iostream>
TH1F *FitAwmi_Create_Spectrum(void)
{
Int_t nbins = 1000;
Double_t xmin = -10., xmax = 10.;
delete gROOT->FindObject("h"); // prevent "memory leak"
TH1F *h = new TH1F("h", "simulated spectrum", nbins, xmin, xmax);
h->SetStats(kFALSE);
TF1 f("f", "TMath::Gaus(x, [0], [1], 1)", xmin, xmax);
// f.SetParNames("mean", "sigma");
gRandom->SetSeed(0); // make it really random
// create well separated peaks with exactly known means and areas
// note: TSpectrumFit assumes that all peaks have the same sigma
Double_t sigma = (xmax - xmin) / Double_t(nbins) * Int_t(gRandom->Uniform(2., 6.));
Int_t npeaks = 0;
while (xmax > (xmin + 6. * sigma)) {
npeaks++;
xmin += 3. * sigma; // "mean"
f.SetParameters(xmin, sigma);
Double_t area = 1. * Int_t(gRandom->Uniform(1., 11.));
h->Add(&f, area, ""); // "" ... or ... "I"
std::cout << "created " << xmin << " " << (area / sigma / TMath::Sqrt(TMath::TwoPi())) << " " << area
<< std::endl;
xmin += 3. * sigma;
}
std::cout << "the total number of created peaks = " << npeaks << " with sigma = " << sigma << std::endl;
return h;
}
void FitAwmi(void)
{
TH1F *h = FitAwmi_Create_Spectrum();
TCanvas *cFit = ((TCanvas *)(gROOT->GetListOfCanvases()->FindObject("cFit")));
if (!cFit)
cFit = new TCanvas("cFit", "cFit", 10, 10, 1000, 700);
else
cFit->Clear();
h->Draw("L");
Int_t i, nfound, bin;
Int_t nbins = h->GetNbinsX();
Double_t *source = new Double_t[nbins];
Double_t *dest = new Double_t[nbins];
for (i = 0; i < nbins; i++)
source[i] = h->GetBinContent(i + 1);
TSpectrum *s = new TSpectrum(); // note: default maxpositions = 100
// searching for candidate peaks positions
nfound = s->SearchHighRes(source, dest, nbins, 2., 2., kFALSE, 10000, kFALSE, 0);
// filling in the initial estimates of the input parameters
Bool_t *FixPos = new Bool_t[nfound];
Bool_t *FixAmp = new Bool_t[nfound];
for (i = 0; i < nfound; i++)
FixAmp[i] = FixPos[i] = kFALSE;
Double_t *Pos, *Amp = new Double_t[nfound]; // ROOT 6
Pos = s->GetPositionX(); // 0 ... (nbins - 1)
for (i = 0; i < nfound; i++) {
bin = 1 + Int_t(Pos[i] + 0.5); // the "nearest" bin
Amp[i] = h->GetBinContent(bin);
}
TSpectrumFit *pfit = new TSpectrumFit(nfound);
pfit->SetFitParameters(0, (nbins - 1), 1000, 0.1, pfit->kFitOptimChiCounts, pfit->kFitAlphaHalving, pfit->kFitPower2,
pfit->kFitTaylorOrderFirst);
pfit->SetPeakParameters(2., kFALSE, Pos, FixPos, Amp, FixAmp);
// pfit->SetBackgroundParameters(source[0], kFALSE, 0., kFALSE, 0., kFALSE);
pfit->FitAwmi(source);
Double_t *Positions = pfit->GetPositions();
Double_t *PositionsErrors = pfit->GetPositionsErrors();
Double_t *Amplitudes = pfit->GetAmplitudes();
Double_t *AmplitudesErrors = pfit->GetAmplitudesErrors();
Double_t *Areas = pfit->GetAreas();
Double_t *AreasErrors = pfit->GetAreasErrors();
delete gROOT->FindObject("d"); // prevent "memory leak"
TH1F *d = new TH1F(*h);
d->SetNameTitle("d", "");
d->Reset("M");
for (i = 0; i < nbins; i++)
d->SetBinContent(i + 1, source[i]);
Double_t x1 = d->GetBinCenter(1), dx = d->GetBinWidth(1);
Double_t sigma, sigmaErr;
pfit->GetSigma(sigma, sigmaErr);
// current TSpectrumFit needs a sqrt(2) correction factor for sigma
sigma /= TMath::Sqrt2();
sigmaErr /= TMath::Sqrt2();
// convert "bin numbers" into "x-axis values"
sigma *= dx;
sigmaErr *= dx;
std::cout << "the total number of found peaks = " << nfound << " with sigma = " << sigma << " (+-" << sigmaErr << ")"
<< std::endl;
std::cout << "fit chi^2 = " << pfit->GetChi() << std::endl;
for (i = 0; i < nfound; i++) {
bin = 1 + Int_t(Positions[i] + 0.5); // the "nearest" bin
Pos[i] = d->GetBinCenter(bin);
Amp[i] = d->GetBinContent(bin);
// convert "bin numbers" into "x-axis values"
Positions[i] = x1 + Positions[i] * dx;
PositionsErrors[i] *= dx;
Areas[i] *= dx;
AreasErrors[i] *= dx;
std::cout << "found " << Positions[i] << " (+-" << PositionsErrors[i] << ") " << Amplitudes[i] << " (+-"
<< AmplitudesErrors[i] << ") " << Areas[i] << " (+-" << AreasErrors[i] << ")" << std::endl;
}
d->SetLineColor(kRed);
d->SetLineWidth(1);
d->Draw("SAME L");
TPolyMarker *pm = ((TPolyMarker *)(h->GetListOfFunctions()->FindObject("TPolyMarker")));
if (pm) {
h->GetListOfFunctions()->Remove(pm);
delete pm;
}
pm = new TPolyMarker(nfound, Pos, Amp);
h->GetListOfFunctions()->Add(pm);
pm->SetMarkerStyle(23);
pm->SetMarkerColor(kRed);
pm->SetMarkerSize(1);
// cleanup
delete pfit;
delete[] Amp;
delete[] FixAmp;
delete[] FixPos;
delete s;
delete[] dest;
delete[] source;
return;
}
d
#define d(i)
Definition RSha256.hxx:102
f
#define f(i)
Definition RSha256.hxx:104
h
#define h(i)
Definition RSha256.hxx:106
Bool_t
bool Bool_t
Boolean (0=false, 1=true) (bool)
Definition RtypesCore.h:77
Int_t
int Int_t
Signed integer 4 bytes (int)
Definition RtypesCore.h:59
kFALSE
constexpr Bool_t kFALSE
Definition RtypesCore.h:108
Double_t
double Double_t
Double 8 bytes.
Definition RtypesCore.h:73
kRed
@ kRed
Definition Rtypes.h:67
TRangeDynCast
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
Definition TCollection.h:360
dest
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t dest
Definition TGWin32VirtualXProxy.cxx:164
x1
Option_t Option_t TPoint TPoint const char x1
Definition TGWin32VirtualXProxy.cxx:70
xmin
float xmin
Definition THbookFile.cxx:95
xmax
float xmax
Definition THbookFile.cxx:95
gROOT
#define gROOT
Definition TROOT.h:426
gRandom
R__EXTERN TRandom * gRandom
Definition TRandom.h:62
TCanvas
The Canvas class.
Definition TCanvas.h:23
TF1
1-Dim function class
Definition TF1.h:182
TH1F
1-D histogram with a float per channel (see TH1 documentation)
Definition TH1.h:878
TPolyMarker
A PolyMarker is defined by an array on N points in a 2-D space.
Definition TPolyMarker.h:31
TRandom::SetSeed
virtual void SetSeed(ULong_t seed=0)
Set the random generator seed.
Definition TRandom.cxx:614
TRandom::Uniform
virtual Double_t Uniform(Double_t x1=1)
Returns a uniform deviate on the interval (0, x1).
Definition TRandom.cxx:681
TSpectrumFit
Advanced 1-dimensional spectra fitting functions.
Definition TSpectrumFit.h:18
TSpectrum
Advanced Spectra Processing.
Definition TSpectrum.h:18
TSpectrum::SearchHighRes
Int_t SearchHighRes(Double_t *source, Double_t *destVector, Int_t ssize, Double_t sigma, Double_t threshold, bool backgroundRemove, Int_t deconIterations, bool markov, Int_t averWindow)
One-dimensional high-resolution peak search function.
Definition TSpectrum.cxx:2118
TSpectrum::GetPositionX
Double_t * GetPositionX() const
Definition TSpectrum.h:58
sigma
const Double_t sigma
Definition h1analysisProxy.h:11
TMath::Sqrt2
constexpr Double_t Sqrt2()
Definition TMath.h:89
TMath::Sqrt
Double_t Sqrt(Double_t x)
Returns the square root of x.
Definition TMath.h:673
TMath::TwoPi
constexpr Double_t TwoPi()
Definition TMath.h:47
Author

Definition in file FitAwmi.C.