63 return std::make_unique<RRDFCardinalityField>(
newName);
104 *
static_cast<std::size_t *
>(to) =
size;
113 *
static_cast<std::size_t *
>(to) =
size;
170 std::unique_ptr<RFieldBase::RValue>
fValue;
210 auto onDiskType =
source.GetSharedDescriptorGuard()->GetFieldDescriptor(
fField->GetOnDiskId()).GetTypeName();
211 std::string
msg =
"RNTupleDS: invalid type \"" +
fField->GetTypeName() +
"\" for column \"" +
214 throw std::runtime_error(
msg);
224 fValue = std::make_unique<RFieldBase::RValue>(
fField->CreateValue());
244 return fValue->GetPtr<
void>().get();
300 fieldDesc.GetTypeName().substr(0, 12) ==
"std::vector<" ||
fieldDesc.GetTypeName() ==
"");
330 f.SetOnDiskId(desc.
FindFieldId(
f.GetFieldName(),
f.GetParent()->GetOnDiskId()));
337 if (
info.fNRepetitions > 0) {
399 fPrincipalDescriptor =
pageSource->GetSharedDescriptorGuard()->Clone();
400 fStagingArea.emplace_back(std::move(
pageSource));
402 AddField(fPrincipalDescriptor,
"", fPrincipalDescriptor.GetFieldZeroId(),
403 std::vector<ROOT::RDF::RNTupleDS::RFieldInfo>());
414 static std::once_flag
flag;
415 std::call_once(
flag, []() {
426std::unique_ptr<ROOT::Internal::RPageSource> CreatePageSource(std::string_view
ntupleName, std::string_view fileName)
435 fFileNames = std::vector<std::string>{std::string{fileName}};
447 const std::pair<ULong64_t, ULong64_t> &
range)
464 std::distance(fColumnNames.begin(), std::find(fColumnNames.begin(), fColumnNames.end(),
fieldName));
469 return fProtoFields[
index].get();
484 return fld->GetTypeName() == requestedType;
493 throw std::runtime_error(
"RNTupleDS: Could not create field with type \"" +
requestedType +
494 "\" for column \"" + std::string(
fieldName) +
"\"");
504 return fProtoFields[
index].get();
507std::unique_ptr<ROOT::Detail::RDF::RColumnReaderBase>
515 fFieldId2QualifiedName[
field->GetOnDiskId()] = fPrincipalDescriptor.GetQualifiedFieldName(
field->GetOnDiskId());
516 for (
const auto &s : *
field) {
517 fFieldId2QualifiedName[s.GetOnDiskId()] = fPrincipalDescriptor.GetQualifiedFieldName(s.GetOnDiskId());
520 auto reader = std::make_unique<ROOT::Internal::RDF::RNTupleColumnReader>(
this,
field);
521 fActiveColumnReaders[
slot].emplace_back(
reader.get());
529 std::unique_lock lock(fMutexStaging);
530 fCvStaging.wait(lock, [
this] {
return fIsReadyForStaging || fStagingThreadShouldTerminate; });
531 if (fStagingThreadShouldTerminate)
536 fHasNextSources =
true;
537 fIsReadyForStaging =
false;
540 fCvStaging.notify_one();
546 const auto nFiles = fFileNames.empty() ? 1 : fFileNames.size();
548 for (
auto i = fNextFileIndex; (i <
nFiles) && ((i - fNextFileIndex) < fNSlots); ++i) {
550 if (fStagingThreadShouldTerminate)
553 if (fStagingArea[i]) {
557 fStagingArea[i] = CreatePageSource(fNTupleName, fFileNames[i]);
558 fStagingArea[i]->LoadStructure();
565 assert(fNextRanges.empty());
567 auto nFiles = fFileNames.empty() ? 1 : fFileNames.size();
576 while ((fNextRanges.size() < fNSlots) && (fNextFileIndex <
nFiles)) {
579 std::swap(fStagingArea[fNextFileIndex],
range.fSource);
581 if (!
range.fSource) {
584 range.fSource = CreatePageSource(fNTupleName, fFileNames[fNextFileIndex]);
586 range.fFileName = fFileNames[fNextFileIndex];
587 range.fSource->Attach();
594 fNextRanges.emplace_back(std::move(
range));
603 for (std::size_t i = 0; (fNextRanges.size() < fNSlots) && (fNextFileIndex <
nFiles); ++i) {
604 std::unique_ptr<ROOT::Internal::RPageSource>
source;
607 std::swap(fStagingArea[fNextFileIndex],
source);
610 source = CreatePageSource(fNTupleName, fFileNames[fNextFileIndex]);
635 unsigned int iSlot = 0;
651 range.fSource->SetEntryRange({start, end - start});
652 range.fFirstEntry = start;
653 range.fLastEntry = end;
654 fNextRanges.emplace_back(std::move(
range));
661 std::vector<std::pair<ULong64_t, ULong64_t>> ranges;
670 for (
auto r : fActiveColumnReaders[0]) {
671 r->Disconnect(
true );
677 if (fCurrentRanges.empty() || fSeenEntriesNoGlobalRange > 0) {
681 std::unique_lock lock(fMutexStaging);
682 fCvStaging.wait(lock, [
this] {
return fHasNextSources; });
685 if (fNextRanges.empty()) {
690 assert(fNextRanges.size() <= fNSlots);
692 fCurrentRanges.clear();
693 std::swap(fCurrentRanges, fNextRanges);
698 std::lock_guard
_(fMutexStaging);
699 fIsReadyForStaging =
true;
700 fHasNextSources =
false;
702 fCvStaging.notify_one();
709 fFirstEntry2RangeIdx.clear();
710 fOriginalRanges.clear();
714 for (std::size_t i = 0; i < fCurrentRanges.size(); ++i) {
718 if (fCurrentRanges[i].fFirstEntry == 0) {
724 auto start = fCurrentRanges[i].fFirstEntry + fSeenEntriesNoGlobalRange;
725 auto end = fCurrentRanges[i].fLastEntry + fSeenEntriesNoGlobalRange;
729 if (fGlobalEntryRange.has_value()) {
747 if (fGlobalEntryRange->first >= start && fGlobalEntryRange->second <= end) {
748 fOriginalRanges.emplace_back(start, end);
749 fFirstEntry2RangeIdx[fGlobalEntryRange->first] = i;
750 ranges.emplace_back(fGlobalEntryRange->first, fGlobalEntryRange->second);
755 else if (fGlobalEntryRange->second > end && fGlobalEntryRange->first < end) {
756 fOriginalRanges.emplace_back(start, end);
757 fFirstEntry2RangeIdx[fGlobalEntryRange->first] = i;
758 ranges.emplace_back(fGlobalEntryRange->first, end);
759 std::optional<std::pair<ULong64_t, ULong64_t>>
newvalues({end, fGlobalEntryRange->second});
763 else if (fGlobalEntryRange->second < start) {
768 else if (fGlobalEntryRange->first >= end) {
769 fOriginalRanges.emplace_back(start, end);
770 fFirstEntry2RangeIdx[start] = i;
771 ranges.emplace_back(start, start);
776 fFirstEntry2RangeIdx[start] = i;
777 fOriginalRanges.emplace_back(start, end);
778 ranges.emplace_back(start, end);
784 if ((fNSlots == 1) && (fCurrentRanges[0].fSource)) {
785 for (
auto r : fActiveColumnReaders[0]) {
786 r->Connect(*fCurrentRanges[0].fSource, fOriginalRanges[0].first);
797 fSlotsToRangeIdxs[0] = 0;
808 fSlotsToRangeIdxs[
slot * ROOT::Internal::RDF::CacheLineStep<std::size_t>()] =
idxRange;
810 for (
auto r : fActiveColumnReaders[
slot]) {
811 r->Connect(*fCurrentRanges[
idxRange].fSource,
821 for (
auto r : fActiveColumnReaders[
slot]) {
822 r->Disconnect(
true );
831 auto msg = std::string(
"RNTupleDS: There is no column with name \"") + std::string(
colName) +
"\"";
832 throw std::runtime_error(
msg);
836 return fColumnTypes[
index];
841 return std::find(fColumnNames.begin(), fColumnNames.end(),
colName) != fColumnNames.end();
846 fSeenEntriesNoGlobalRange = 0;
848 fIsReadyForStaging = fHasNextSources = fStagingThreadShouldTerminate =
false;
849 fThreadStaging = std::thread(&RNTupleDS::ExecStaging,
this);
850 assert(fNextRanges.empty());
852 if (fCurrentRanges.empty() || (fFileNames.size() > fNSlots)) {
855 std::lock_guard
_(fMutexStaging);
856 fIsReadyForStaging =
true;
858 fCvStaging.notify_one();
862 fNextFileIndex = std::max(fFileNames.size(), std::size_t(1));
868 for (
unsigned int i = 0; i < fNSlots; ++i) {
869 for (
auto r : fActiveColumnReaders[i]) {
870 r->Disconnect(
false );
874 std::lock_guard
_(fMutexStaging);
875 fStagingThreadShouldTerminate =
true;
877 fCvStaging.notify_one();
878 fThreadStaging.join();
881 if (fFileNames.size() > fNSlots) {
882 fCurrentRanges.clear();
884 fStagingArea.clear();
885 fStagingArea.resize(fFileNames.size());
894 fActiveColumnReaders.resize(fNSlots);
895 fSlotsToRangeIdxs.resize(fNSlots * ROOT::Internal::RDF::CacheLineStep<std::size_t>());
909 unsigned int slot,
const std::unordered_map<std::string, ROOT::RDF::Experimental::RSample *> &
sampleMap)
const
916 const auto &
rangeIdx = fSlotsToRangeIdxs.at(
slot * ROOT::Internal::RDF::CacheLineStep<std::size_t>());
919 if (!fCurrentRanges[
rangeIdx].fSource)
929 fPrincipalDescriptor.GetNEntries());
932 throw std::runtime_error(
"Full sample identifier '" +
ntupleID +
"' cannot be found in the available samples.");
941 const std::pair<ULong64_t, ULong64_t> &
range)
#define R__FAIL(msg)
Short-hand to return an RResult<T> in an error state; the RError is implicitly converted into RResult...
size_t size(const MatrixT &matrix)
retrieve the size of a square matrix
long long Long64_t
Portable signed long integer 8 bytes.
unsigned long long ULong64_t
Portable unsigned long integer 8 bytes.
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t r
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t index
R__EXTERN TSystem * gSystem
void GetCollectionInfo(const ROOT::NTupleSize_t globalIndex, RNTupleLocalIndex *collectionStart, ROOT::NTupleSize_t *collectionSize)
For offset columns only, look at the two adjacent values that define a collection's coordinates.
An artificial field that provides the size of a fixed-size array.
void GenerateColumns(const ROOT::RNTupleDescriptor &) final
Implementations in derived classes should create the backing columns corresponding to the field type ...
void ReadGlobalImpl(ROOT::NTupleSize_t, void *to) final
RArraySizeField(const RArraySizeField &other)=delete
RArraySizeField(RArraySizeField &&other)=default
RArraySizeField & operator=(RArraySizeField &&other)=default
RArraySizeField(std::string_view name, std::size_t arrayLength)
void ReadInClusterImpl(RNTupleLocalIndex, void *to) final
void ReconcileOnDiskField(const RNTupleDescriptor &) final
For non-artificial fields, check compatibility of the in-memory field and the on-disk field.
std::size_t GetValueSize() const final
The number of bytes taken by a value of the appropriate type.
void ConstructValue(void *where) const final
Constructs value in a given location of size at least GetValueSize(). Called by the base class' Creat...
~RArraySizeField() final=default
RArraySizeField & operator=(const RArraySizeField &other)=delete
std::size_t GetAlignment() const final
As a rule of thumb, the alignment is equal to the size of the type.
void GenerateColumns() final
Implementations in derived classes should create the backing columns corresponding to the field type ...
std::unique_ptr< ROOT::RFieldBase > CloneImpl(std::string_view newName) const final
Called by Clone(), which additionally copies the on-disk ID.
Every RDF column is represented by exactly one RNTuple field.
void * GetImpl(Long64_t entry) final
void Connect(RPageSource &source, Long64_t entryOffset)
Connect the field and its subfields to the page source.
RNTupleColumnReader(RNTupleDS *ds, RFieldBase *protoField)
std::unique_ptr< RFieldBase::RValue > fValue
The memory location used to read from fField.
std::unique_ptr< RFieldBase > fField
The field backing the RDF column.
Long64_t fEntryOffset
For chains, the logical entry and the physical entry in any particular file can be different.
std::shared_ptr< void > fValuePtr
Used to reuse the object created by fValue when reconnecting sources.
RNTupleDS * fDataSource
The data source that owns this column reader.
~RNTupleColumnReader() override=default
RFieldBase * fProtoField
The prototype field from which fField is cloned.
Long64_t fLastEntry
Last entry number that was read.
void Disconnect(bool keepValue)
An artificial field that transforms an RNTuple column that contains the offset of collections into co...
RRDFCardinalityField(RRDFCardinalityField &&other)=default
size_t GetAlignment() const final
As a rule of thumb, the alignment is equal to the size of the type.
void GenerateColumns() final
Implementations in derived classes should create the backing columns corresponding to the field type ...
RRDFCardinalityField(std::string_view name)
void ReadGlobalImpl(ROOT::NTupleSize_t globalIndex, void *to) final
Get the number of elements of the collection identified by globalIndex.
void ReconcileOnDiskField(const RNTupleDescriptor &) final
For non-artificial fields, check compatibility of the in-memory field and the on-disk field.
RRDFCardinalityField & operator=(RRDFCardinalityField &&other)=default
std::unique_ptr< ROOT::RFieldBase > CloneImpl(std::string_view newName) const final
Called by Clone(), which additionally copies the on-disk ID.
void GenerateColumns(const ROOT::RNTupleDescriptor &desc) final
Implementations in derived classes should create the backing columns corresponding to the field type ...
~RRDFCardinalityField() override=default
const RColumnRepresentations & GetColumnRepresentations() const final
Implementations in derived classes should return a static RColumnRepresentations object.
size_t GetValueSize() const final
The number of bytes taken by a value of the appropriate type.
void ReadInClusterImpl(ROOT::RNTupleLocalIndex localIndex, void *to) final
Get the number of elements of the collection identified by clusterIndex.
void ConstructValue(void *where) const final
Constructs value in a given location of size at least GetValueSize(). Called by the base class' Creat...
static void SetClusterBunchSize(RNTupleReadOptions &options, unsigned int val)
Abstract interface to read data from an ntuple.
static std::unique_ptr< RPageSource > Create(std::string_view ntupleName, std::string_view location, const ROOT::RNTupleReadOptions &options=ROOT::RNTupleReadOptions())
Guess the concrete derived page source from the file name (location)
std::vector< void * > Record_t
std::optional< std::pair< ULong64_t, ULong64_t > > fGlobalEntryRange
The RDataSource implementation for RNTuple.
void AddField(const ROOT::RNTupleDescriptor &desc, std::string_view colName, ROOT::DescriptorId_t fieldId, std::vector< RFieldInfo > fieldInfos, bool convertToRVec=true)
Provides the RDF column "colName" given the field identified by fieldID.
std::vector< std::pair< ULong64_t, ULong64_t > > GetEntryRanges() final
Return ranges of entries to distribute to tasks.
void ExecStaging()
The main function of the fThreadStaging background thread.
std::vector< std::unique_ptr< ROOT::Internal::RPageSource > > fStagingArea
The staging area is relevant for chains of files, i.e.
std::unique_ptr< ROOT::Detail::RDF::RColumnReaderBase > GetColumnReaders(unsigned int, std::string_view, const std::type_info &) final
If the other GetColumnReaders overload returns an empty vector, this overload will be called instead.
std::vector< std::unique_ptr< ROOT::RFieldBase > > fProtoFields
We prepare a prototype field for every column.
void SetNSlots(unsigned int nSlots) final
Inform RDataSource of the number of processing slots (i.e.
ROOT::RFieldBase * GetFieldWithTypeChecks(std::string_view fieldName, const std::type_info &tid)
std::vector< std::string > fFileNames
void InitSlot(unsigned int slot, ULong64_t firstEntry) final
Convenience method called at the start of the data processing associated to a slot.
RNTupleDS(std::unique_ptr< ROOT::Internal::RPageSource > pageSource)
std::string GetTypeName(std::string_view colName) const final
Type of a column as a string, e.g.
std::unordered_map< ROOT::DescriptorId_t, std::string > fFieldId2QualifiedName
Connects the IDs of active proto fields and their subfields to their fully qualified name (a....
std::string fNTupleName
The data source may be constructed with an ntuple name and a list of files.
void PrepareNextRanges()
Populates fNextRanges with the next set of entry ranges.
void StageNextSources()
Starting from fNextFileIndex, opens the next fNSlots files.
void Finalize() final
Convenience method called after concluding an event-loop.
std::vector< std::string > fColumnTypes
void Initialize() final
Convenience method called before starting an event-loop.
std::vector< std::string > fColumnNames
bool HasColumn(std::string_view colName) const final
Checks if the dataset has a certain column.
Record_t GetColumnReadersImpl(std::string_view name, const std::type_info &) final
type-erased vector of pointers to pointers to column values - one per slot
void FinalizeSlot(unsigned int slot) final
Convenience method called at the end of the data processing associated to a slot.
This type represents a sample identifier, to be used in conjunction with RDataFrame features such as ...
ROOT's RDataFrame offers a modern, high-level interface for analysis of data stored in TTree ,...
Base class for all ROOT issued exceptions.
The list of column representations a field can have.
A field translates read and write calls from/to underlying columns to/from tree values.
ROOT::Internal::RColumn * fPrincipalColumn
All fields that have columns have a distinct main column.
RConstSchemaIterator cbegin() const
const std::string & GetFieldName() const
static RResult< std::unique_ptr< RFieldBase > > Create(const std::string &fieldName, const std::string &typeName, const ROOT::RCreateFieldOptions &options, const ROOT::RNTupleDescriptor *desc, ROOT::DescriptorId_t fieldId)
Factory method to resurrect a field from the stored on-disk type information.
ROOT::DescriptorId_t GetOnDiskId() const
std::unique_ptr< RFieldBase > Clone(std::string_view newName) const
Copies the field and its subfields using a possibly new name and a new, unconnected set of columns.
The container field for an ntuple model, which itself has no physical representation.
The on-storage metadata of an RNTuple.
RFieldDescriptorIterable GetFieldIterable(const RFieldDescriptor &fieldDesc) const
const RFieldDescriptor & GetFieldDescriptor(ROOT::DescriptorId_t fieldId) const
ROOT::DescriptorId_t FindFieldId(std::string_view fieldName, ROOT::DescriptorId_t parentId) const
Addresses a column element or field item relative to a particular cluster, instead of a global NTuple...
Common user-tunable settings for reading RNTuples.
const_iterator begin() const
const_iterator end() const
virtual const char * Getenv(const char *env)
Get environment variable.
std::string TypeID2TypeName(const std::type_info &id)
Returns the name of a type starting from its type_info An empty string is returned in case of failure...
ROOT::RDataFrame FromRNTuple(std::string_view ntupleName, const std::vector< std::string > &fileNames, const std::pair< ULong64_t, ULong64_t > &range)
Internal overload of the function that allows passing a range of entries.
std::pair< std::vector< ROOT::Internal::RNTupleClusterBoundaries >, ROOT::NTupleSize_t > GetClustersAndEntries(std::string_view ntupleName, std::string_view location)
Retrieves the cluster boundaries and the number of entries for the input RNTuple.
void SetAllowFieldSubstitutions(RFieldZero &fieldZero, bool val)
void CallConnectPageSourceOnField(RFieldBase &, ROOT::Internal::RPageSource &)
std::vector< ROOT::Internal::RNTupleClusterBoundaries > GetClusterBoundaries(const RNTupleDescriptor &desc)
Return the cluster boundaries for each cluster in this RNTuple.
std::string GetRenormalizedTypeName(const std::string &metaNormalizedName)
Given a type name normalized by ROOT meta, renormalize it for RNTuple. E.g., insert std::prefix.
RDataFrame FromRNTuple(std::string_view ntupleName, std::string_view fileName)
std::vector< std::string > ColumnNames_t
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
ENTupleStructure
The fields in the RNTuple data model tree can carry different structural information about the type s...
Tag to let data sources use the native data type when creating a column reader.
The PrepareNextRanges() method populates the fNextRanges list with REntryRangeDS records.