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RPageStorageDaos.cxx
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1/// \file RPageStorageDaos.cxx
2/// \author Javier Lopez-Gomez <j.lopez@cern.ch>
3/// \date 2020-11-03
4/// \warning This is part of the ROOT 7 prototype! It will change without notice. It might trigger earthquakes. Feedback
5/// is welcome!
6
7/*************************************************************************
8 * Copyright (C) 1995-2021, Rene Brun and Fons Rademakers. *
9 * All rights reserved. *
10 * *
11 * For the licensing terms see $ROOTSYS/LICENSE. *
12 * For the list of contributors see $ROOTSYS/README/CREDITS. *
13 *************************************************************************/
14
15#include <ROOT/RCluster.hxx>
16#include <ROOT/RLogger.hxx>
18#include <ROOT/RNTupleModel.hxx>
21#include <ROOT/RNTupleTypes.hxx>
22#include <ROOT/RNTupleUtils.hxx>
23#include <ROOT/RNTupleZip.hxx>
24#include <ROOT/RPage.hxx>
26#include <ROOT/RPagePool.hxx>
27#include <ROOT/RDaos.hxx>
29
30#include <RVersion.h>
31#include <TError.h>
32
33#include <algorithm>
34#include <cstdio>
35#include <cstdlib>
36#include <cstring>
37#include <limits>
38#include <tuple>
39#include <utility>
40#include <regex>
41#include <cassert>
42
43namespace {
52
53struct RDaosKey {
54 daos_obj_id_t fOid;
55 DistributionKey_t fDkey;
56 AttributeKey_t fAkey;
57};
58
59/// \brief Pre-defined keys for object store. `kDistributionKeyDefault` is the distribution key for all objects,
60/// `kAttributeKeyDefault` is the attribute key for all objects but anchor, header, footer.
61/// `kAttributeKey{Anchor,Header,Footer}` are the respective attribute keys for anchor/header/footer metadata elements.
62static constexpr DistributionKey_t kDistributionKeyDefault = 0x5a3c69f0cafe4a11;
63static constexpr AttributeKey_t kAttributeKeyDefault = 0x4243544b53444229;
64static constexpr AttributeKey_t kAttributeKeyAnchor = 0x4243544b5344422a;
65static constexpr AttributeKey_t kAttributeKeyHeader = 0x4243544b5344422b;
66static constexpr AttributeKey_t kAttributeKeyFooter = 0x4243544b5344422c;
67
68/// \brief Pre-defined 64 LSb of the OIDs for ntuple metadata (holds anchor/header/footer) and clusters' pagelists.
69static constexpr decltype(daos_obj_id_t::lo) kOidLowMetadata = -1;
70static constexpr decltype(daos_obj_id_t::lo) kOidLowPageList = -2;
71
72/// Because the object class becomes part of the object ID (encoded in the system-reserved 32 bits), we have to
73/// hard-code the object class for the anchor. Otherwise, we would need ask the user to specify the correct object
74/// class in the RNTupleReadOptions when trying to open a previously written data set, which is not really acceptable.
75/// The object class set in the RNTupleWriteOptions thus applies to all objects except the anchor.
76static constexpr daos_oclass_id_t kCidAnchor = OC_UNKNOWN;
77
79{
80 return RDaosKey{daos_obj_id_t{static_cast<decltype(daos_obj_id_t::lo)>(pageCount),
81 static_cast<decltype(daos_obj_id_t::hi)>(ntplId)},
83}
84
85struct RDaosURI {
86 /// \brief Label of the DAOS pool
87 std::string fPoolLabel;
88 /// \brief Label of the container for this RNTuple
89 std::string fContainerLabel;
90};
91
92/**
93 \brief Parse a DAOS RNTuple URI of the form 'daos://pool_id/container_id'.
94*/
95RDaosURI ParseDaosURI(std::string_view uri)
96{
97 std::regex re("daos://([^/]+)/(.+)");
98 std::cmatch m;
99 if (!std::regex_match(uri.data(), m, re))
100 throw ROOT::RException(R__FAIL("Invalid DAOS pool URI."));
101 return {m[1], m[2]};
102}
103
104/// \brief Helper structure concentrating the functionality required to locate an ntuple within a DAOS container.
105/// It includes a hashing function that converts the RNTuple's name into a 32-bit identifier; this value is used to
106/// index the subspace for the ntuple among all objects in the container. A zero-value hash value is reserved for
107/// storing any future metadata related to container-wide management; a zero-index ntuple is thus disallowed and
108/// remapped to "1". Once the index is computed, `InitNTupleDescriptorBuilder()` can be called to return a
109/// partially-filled builder with the ntuple's anchor, header and footer, lacking only pagelists. Upon that call,
110/// a copy of the anchor is stored in `fAnchor`.
111struct RDaosContainerNTupleLocator {
112 std::string fName{};
113 ntuple_index_t fIndex{};
114 std::optional<ROOT::Experimental::Internal::RDaosNTupleAnchor> fAnchor;
115 static const ntuple_index_t kReservedIndex = 0;
116
117 RDaosContainerNTupleLocator() = default;
118 explicit RDaosContainerNTupleLocator(const std::string &ntupleName) : fName(ntupleName), fIndex(Hash(ntupleName)) {}
119
120 bool IsValid() { return fAnchor.has_value() && fAnchor->fNBytesHeader; }
121 [[nodiscard]] ntuple_index_t GetIndex() const { return fIndex; };
122 static ntuple_index_t Hash(const std::string &ntupleName)
123 {
124 // Convert string to numeric representation via `std::hash`.
125 uint64_t h = std::hash<std::string>{}(ntupleName);
126 // Fold the hash into 32-bit using `boost::hash_combine()` algorithm and magic number.
127 auto seed = static_cast<uint32_t>(h >> 32);
128 seed ^= static_cast<uint32_t>(h & 0xffffffff) + 0x9e3779b9 + (seed << 6) + (seed >> 2);
129 auto hash = static_cast<ntuple_index_t>(seed);
130 return (hash == kReservedIndex) ? kReservedIndex + 1 : hash;
131 }
132
135 {
136 std::unique_ptr<unsigned char[]> buffer;
137 auto &anchor = fAnchor.emplace();
138 int err;
139
141 daos_obj_id_t oidMetadata{kOidLowMetadata, static_cast<decltype(daos_obj_id_t::hi)>(this->GetIndex())};
142
144 if ((err = cont.ReadSingleAkey(buffer.get(), anchorSize, oidMetadata, kDistributionKeyDefault,
146 return err;
147 }
148
149 anchor.Deserialize(buffer.get(), anchorSize).Unwrap();
150
151 builder.SetVersion(anchor.fVersionEpoch, anchor.fVersionMajor, anchor.fVersionMinor, anchor.fVersionPatch);
152 builder.SetOnDiskHeaderSize(anchor.fNBytesHeader);
153 builder.AddToOnDiskFooterSize(anchor.fNBytesFooter);
154
155 return 0;
156 }
157
158 static std::pair<RDaosContainerNTupleLocator, ROOT::Internal::RNTupleDescriptorBuilder>
160 {
161 auto result = std::make_pair(RDaosContainerNTupleLocator(ntupleName), ROOT::Internal::RNTupleDescriptorBuilder());
162
163 auto &loc = result.first;
164 auto &builder = result.second;
165
166 loc.InitNTupleDescriptorBuilder(cont, builder);
167 return result;
168 }
169};
170
171} // anonymous namespace
172
173////////////////////////////////////////////////////////////////////////////////
174
192
195{
196 if (bufSize < 32)
197 return R__FAIL("DAOS anchor too short");
198
199 auto bytes = reinterpret_cast<const unsigned char *>(buffer);
201 if (fVersionAnchor != RDaosNTupleAnchor().fVersionAnchor) {
202 return R__FAIL("unsupported DAOS anchor version: " + std::to_string(fVersionAnchor));
203 }
204
214 if (!result)
215 return R__FORWARD_ERROR(result);
216 return result.Unwrap() + 32;
217}
218
223
224////////////////////////////////////////////////////////////////////////////////
225
227 const ROOT::RNTupleWriteOptions &options)
228 : RPagePersistentSink(ntupleName, options), fURI(uri)
229{
230 static std::once_flag once;
231 std::call_once(once, []() {
232 R__LOG_WARNING(ROOT::Internal::NTupleLog()) << "The DAOS backend is experimental and still under development. "
233 << "Do not store real data with this version of RNTuple!";
234 });
235 EnableDefaultMetrics("RPageSinkDaos");
236}
237
239
241{
242 auto opts = dynamic_cast<RNTupleWriteOptionsDaos *>(fOptions.get());
243 fNTupleAnchor.fObjClass = opts ? opts->GetObjectClass() : RNTupleWriteOptionsDaos().GetObjectClass();
244
245 auto args = ParseDaosURI(fURI);
246 auto pool = std::make_unique<RDaosPool>(args.fPoolLabel);
247
248 fDaosContainer = std::make_unique<RDaosContainer>(std::move(pool), args.fContainerLabel, /*create =*/true);
249 fDaosContainer->SetDefaultObjectClass(fNTupleAnchor.fObjClass);
250
251 auto [locator, _] = RDaosContainerNTupleLocator::LocateNTuple(*fDaosContainer, fNTupleName);
252 fNTupleIndex = locator.GetIndex();
253
255 auto szZipHeader =
256 RNTupleCompressor::Zip(serializedHeader, length, GetWriteOptions().GetCompression(), zipBuffer.get());
257 WriteNTupleHeader(zipBuffer.get(), szZipHeader, length);
258}
259
263{
264 auto pageId = fPageId.fetch_add(1);
265
266 {
267 Detail::RNTupleAtomicTimer timer(fCounters->fTimeWallWrite, fCounters->fTimeCpuWrite);
268 RDaosKey daosKey = GetPageDaosKey(fNTupleIndex, pageId);
269 fDaosContainer->WriteSingleAkey(sealedPage.GetBuffer(), sealedPage.GetBufferSize(), daosKey.fOid, daosKey.fDkey,
270 daosKey.fAkey);
271 }
272
275 result.SetNBytesOnStorage(sealedPage.GetDataSize());
277 fCounters->fNPageCommitted.Inc();
278 fCounters->fSzWritePayload.Add(sealedPage.GetBufferSize());
279 fNBytesCurrentCluster += sealedPage.GetBufferSize();
280 return result;
281}
282
283std::vector<ROOT::RNTupleLocator>
284ROOT::Experimental::Internal::RPageSinkDaos::CommitSealedPageVImpl(std::span<RPageStorage::RSealedPageGroup> ranges,
285 const std::vector<bool> &mask)
286{
288 std::vector<RNTupleLocator> locators;
289 auto nPages = mask.size();
290 locators.reserve(nPages);
291
292 int64_t payloadSz = 0;
293
294 /// Aggregate batch of requests by object ID and distribution key, determined by the ntuple-DAOS mapping
295 for (auto &range : ranges) {
296 for (auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
298
299 const auto pageId = fPageId.fetch_add(1);
300
302 d_iov_set(&pageIov, const_cast<void *>(s.GetBuffer()), s.GetBufferSize());
303
304 RDaosKey daosKey = GetPageDaosKey(fNTupleIndex, pageId);
307 it->second.Insert(daosKey.fAkey, pageIov);
308
311 locator.SetNBytesOnStorage(s.GetDataSize());
313 locators.push_back(locator);
314
316 }
317 }
318 fNBytesCurrentCluster += payloadSz;
319
320 {
321 Detail::RNTupleAtomicTimer timer(fCounters->fTimeWallWrite, fCounters->fTimeCpuWrite);
322 if (int err = fDaosContainer->WriteV(writeRequests))
323 throw ROOT::RException(R__FAIL("WriteV: error" + std::string(d_errstr(err))));
324 }
325
326 fCounters->fNPageCommitted.Add(nPages);
327 fCounters->fSzWritePayload.Add(payloadSz);
328
329 return locators;
330}
331
333{
334 return std::exchange(fNBytesCurrentCluster, 0);
335}
336
339 std::uint32_t length)
340{
342 auto szPageListZip =
343 RNTupleCompressor::Zip(serializedPageList, length, GetWriteOptions().GetCompression(), bufPageListZip.get());
344
345 auto offsetData = fClusterGroupId.fetch_add(1);
346 // clang-format off
347 fDaosContainer->WriteSingleAkey(
348 bufPageListZip.get(),
350 daos_obj_id_t{kOidLowPageList, static_cast<decltype(daos_obj_id_t::hi)>(fNTupleIndex)},
352 offsetData);
353 // clang-format on
356 result.SetNBytesOnStorage(szPageListZip);
358 fCounters->fSzWritePayload.Add(static_cast<int64_t>(szPageListZip));
359 return result;
360}
361
364{
366 auto szFooterZip =
367 RNTupleCompressor::Zip(serializedFooter, length, GetWriteOptions().GetCompression(), bufFooterZip.get());
368 WriteNTupleFooter(bufFooterZip.get(), szFooterZip, length);
369 WriteNTupleAnchor();
370
371 // TODO: return the proper anchor locator+length
372 return {};
373}
374
376{
377 fDaosContainer->WriteSingleAkey(
378 data, nbytes, daos_obj_id_t{kOidLowMetadata, static_cast<decltype(daos_obj_id_t::hi)>(fNTupleIndex)},
380 fNTupleAnchor.fLenHeader = lenHeader;
381 fNTupleAnchor.fNBytesHeader = nbytes;
382}
383
385{
386 fDaosContainer->WriteSingleAkey(
387 data, nbytes, daos_obj_id_t{kOidLowMetadata, static_cast<decltype(daos_obj_id_t::hi)>(fNTupleIndex)},
389 fNTupleAnchor.fLenFooter = lenFooter;
390 fNTupleAnchor.fNBytesFooter = nbytes;
391}
392
394{
397 fNTupleAnchor.Serialize(buffer.get());
398 fDaosContainer->WriteSingleAkey(
399 buffer.get(), ntplSize, daos_obj_id_t{kOidLowMetadata, static_cast<decltype(daos_obj_id_t::hi)>(fNTupleIndex)},
401}
402
403std::unique_ptr<ROOT::Internal::RPageSink>
405 const ROOT::RNTupleWriteOptions & /*opts*/) const
406{
407 throw ROOT::RException(R__FAIL("cloning a DAOS sink is not implemented yet"));
408}
409
410////////////////////////////////////////////////////////////////////////////////
411
413 const ROOT::RNTupleReadOptions &options)
414 : RPageSource(ntupleName, options), fURI(uri)
415{
416 EnableDefaultMetrics("RPageSourceDaos");
417
418 auto args = ParseDaosURI(uri);
419 auto pool = std::make_unique<RDaosPool>(args.fPoolLabel);
420 fDaosContainer = std::make_unique<RDaosContainer>(std::move(pool), args.fContainerLabel);
421}
422
424{
425 StopClusterPoolBackgroundThread();
426}
427
429{
430 RDaosContainerNTupleLocator ntupleLocator;
431 std::tie(ntupleLocator, fDescriptorBuilder) =
432 RDaosContainerNTupleLocator::LocateNTuple(*fDaosContainer, fNTupleName);
433 if (!ntupleLocator.IsValid()) {
434 throw ROOT::RException(
435 R__FAIL("LoadStructureImpl: requested ntuple '" + fNTupleName + "' is not present in DAOS container."));
436 }
437 fAnchor = *ntupleLocator.fAnchor;
438 fNTupleIndex = ntupleLocator.GetIndex();
439
440 fDaosContainer->SetDefaultObjectClass(fAnchor.fObjClass);
441
442 // Reserve enough space for the compressed and the uncompressed header/footer (see AttachImpl)
443 const auto bufSize =
444 fAnchor.fNBytesHeader + fAnchor.fNBytesFooter + std::max(fAnchor.fLenHeader, fAnchor.fLenFooter);
445 fStructureBuffer.fBuffer = MakeUninitArray<unsigned char>(bufSize);
446 fStructureBuffer.fPtrHeader = fStructureBuffer.fBuffer.get();
447 fStructureBuffer.fPtrFooter = fStructureBuffer.fBuffer.get() + fAnchor.fNBytesHeader;
448
449 int err;
451
452 if ((err = fDaosContainer->ReadSingleAkey(fStructureBuffer.fPtrHeader, fAnchor.fNBytesHeader, oidMetadata,
454 throw ROOT::RException(R__FAIL("LoadStructureImpl: cannot load header: " + std::to_string(err)));
455 }
456
457 if ((err = fDaosContainer->ReadSingleAkey(fStructureBuffer.fPtrFooter, fAnchor.fNBytesFooter, oidMetadata,
459 throw ROOT::RException(R__FAIL("LoadStructureImpl: cannot load footer: " + std::to_string(err)));
460 }
461}
462
464{
465 auto unzipBuf = reinterpret_cast<unsigned char *>(fStructureBuffer.fPtrFooter) + fAnchor.fNBytesFooter;
466
467 RNTupleDecompressor::Unzip(fStructureBuffer.fPtrHeader, fAnchor.fNBytesHeader, fAnchor.fLenHeader, unzipBuf);
468 RNTupleSerializer::DeserializeHeader(unzipBuf, fAnchor.fLenHeader, fDescriptorBuilder);
469
470 RNTupleDecompressor::Unzip(fStructureBuffer.fPtrFooter, fAnchor.fNBytesFooter, fAnchor.fLenFooter, unzipBuf);
471 RNTupleSerializer::DeserializeFooter(unzipBuf, fAnchor.fLenFooter, fDescriptorBuilder);
472
473 if (fDescriptorBuilder.GetDescriptor().GetName() != fNTupleName) {
474 // Hash already taken by a differently-named ntuple.
475 throw ROOT::RException(R__FAIL("LocateNTuple: ntuple name '" + fNTupleName + "' unavailable in this container."));
476 }
477
478 return fDescriptorBuilder.MoveDescriptor();
479}
480
482 unsigned char *buffer)
483{
485 fDaosContainer->ReadSingleAkey(buffer, locator.GetNBytesOnStorage(), oidPageList, kDistributionKeyDefault,
486 locator.GetPosition<RNTupleLocatorObject64>().GetLocation());
487}
488
490{
491 return fDaosContainer->GetDefaultObjectClass().ToString();
492}
493
496{
497 RDaosKey daosKey = GetPageDaosKey(fNTupleIndex, locator.GetPosition<RNTupleLocatorObject64>().GetLocation());
498 fDaosContainer->ReadSingleAkey(const_cast<void *>(sealedPage.GetBuffer()), sealedPage.GetBufferSize(), daosKey.fOid,
499 daosKey.fDkey, daosKey.fAkey);
500}
501
502std::unique_ptr<ROOT::Internal::RPageSource> ROOT::Experimental::Internal::RPageSourceDaos::CloneImpl() const
503{
504 auto clone = std::make_unique<RPageSourceDaos>(fNTupleName, fURI, fOptions);
505 clone->fAnchor = fAnchor;
506 clone->fNTupleIndex = fNTupleIndex;
507 if (!fAnchor.fObjClass.empty())
508 clone->fDaosContainer->SetDefaultObjectClass(fAnchor.fObjClass);
509 return clone;
510}
511
512std::vector<std::unique_ptr<RCluster>>
514{
516 ROOT::DescriptorId_t fClusterId = 0;
517 ROOT::DescriptorId_t fColumnId = 0;
518 ROOT::NTupleSize_t fPageNo = 0;
519 std::uint64_t fPageId = 0;
520 std::uint64_t fDataSize = 0; // page payload
521 std::uint64_t fBufferSize = 0; // page payload + checksum (if available)
522 };
523
524 // Prepares read requests for a single cluster; `readRequests` is modified by this function. Requests are coalesced
525 // by OID and distribution key.
526 // TODO(jalopezg): this may be a private member function; that, however, requires additional changes given that
527 // `RDaosContainer::MultiObjectRWOperation_t` cannot be forward-declared
530 auto clusterId = clusterKey.fClusterId;
531 std::vector<RDaosSealedPageLocator> onDiskPages;
532
533 unsigned clusterBufSz = 0, nPages = 0;
534 auto pageZeroMap = std::make_unique<ROOT::Internal::ROnDiskPageMap>();
535 PrepareLoadCluster(
539 const auto &pageLocator = pageInfo.GetLocator();
540 const auto pageId = pageLocator.GetPosition<RNTupleLocatorObject64>().GetLocation();
541 const auto pageBufferSize = pageLocator.GetNBytesOnStorage() + pageInfo.HasChecksum() * kNBytesPageChecksum;
543 pageLocator.GetNBytesOnStorage(), pageBufferSize});
544
545 ++nPages;
547 });
548
549 auto clusterBuffer = new unsigned char[clusterBufSz];
550 auto pageMap =
551 std::make_unique<ROOT::Internal::ROnDiskPageMapHeap>(std::unique_ptr<unsigned char[]>(clusterBuffer));
552
553 // Fill the cluster page map and the read requests for the RDaosContainer::ReadV() call
554 for (const auto &sealedLoc : onDiskPages) {
556 pageMap->Register(key, ROOT::Internal::ROnDiskPage(clusterBuffer, sealedLoc.fBufferSize));
557
558 // Prepare new read request batched up by object ID and distribution key
559 d_iov_t iov;
560 d_iov_set(&iov, clusterBuffer, sealedLoc.fBufferSize);
561
562 RDaosKey daosKey = GetPageDaosKey(fNTupleIndex, sealedLoc.fPageId);
565 itReq->second.Insert(daosKey.fAkey, iov);
566
567 clusterBuffer += sealedLoc.fBufferSize;
568 }
569 fCounters->fNPageRead.Add(nPages);
570 fCounters->fSzReadPayload.Add(clusterBufSz);
571
572 auto cluster = std::make_unique<RCluster>(clusterId);
573 cluster->Adopt(std::move(pageMap));
574 cluster->Adopt(std::move(pageZeroMap));
575 for (auto colId : clusterKey.fPhysicalColumnSet)
576 cluster->SetColumnAvailable(colId);
577 return cluster;
578 };
579
580 fCounters->fNClusterLoaded.Add(clusterKeys.size());
581
582 std::vector<std::unique_ptr<ROOT::Internal::RCluster>> clusters;
584 for (auto key : clusterKeys) {
585 clusters.emplace_back(fnPrepareSingleCluster(key, readRequests));
586 }
587
588 {
589 Detail::RNTupleAtomicTimer timer(fCounters->fTimeWallRead, fCounters->fTimeCpuRead);
590 if (int err = fDaosContainer->ReadV(readRequests))
591 throw ROOT::RException(R__FAIL("ReadV: error" + std::string(d_errstr(err))));
592 }
593 fCounters->fNReadV.Inc();
594 fCounters->fNRead.Add(readRequests.size());
595
596 return clusters;
597}
598
600{
601 R__LOG_WARNING(ROOT::Internal::NTupleLog()) << "DAOS-backed sources have no associated StreamerInfo to load.";
602}
603
604std::unique_ptr<ROOT::Internal::RPageSource>
#define R__FORWARD_ERROR(res)
Short-hand to return an RResult<T> in an error state (i.e. after checking)
Definition RError.hxx:326
#define R__FAIL(msg)
Short-hand to return an RResult<T> in an error state; the RError is implicitly converted into RResult...
Definition RError.hxx:322
#define R__LOG_WARNING(...)
Definition RLogger.hxx:357
#define h(i)
Definition RSha256.hxx:106
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void data
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t mask
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t result
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char Pixmap_t Pixmap_t PictureAttributes_t attr const char char ret_data h unsigned char height h length
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char Pixmap_t Pixmap_t PictureAttributes_t attr const char char ret_data h unsigned char height h Atom_t Int_t ULong_t ULong_t bytes
UInt_t Hash(const TString &s)
Definition TString.h:505
#define _(A, B)
Definition cfortran.h:108
A RDaosContainer provides read/write access to objects in a given container.
Definition RDaos.hxx:155
RDaosObject::DistributionKey_t DistributionKey_t
Definition RDaos.hxx:158
std::unordered_map< ROidDkeyPair, RWOperation, ROidDkeyPair::Hash > MultiObjectRWOperation_t
Definition RDaos.hxx:229
RDaosObject::AttributeKey_t AttributeKey_t
Definition RDaos.hxx:159
std::unique_ptr< ROOT::Internal::RPageSink > CloneAsHidden(std::string_view name, const ROOT::RNTupleWriteOptions &opts) const final
Creates a new sink with the same underlying storage as this but writing to a different RNTuple named ...
std::vector< RNTupleLocator > CommitSealedPageVImpl(std::span< RPageStorage::RSealedPageGroup > ranges, const std::vector< bool > &mask) final
Vector commit of preprocessed pages.
void WriteNTupleFooter(const void *data, size_t nbytes, size_t lenFooter)
std::uint64_t StageClusterImpl() final
Returns the number of bytes written to storage (excluding metadata)
RNTupleLocator CommitClusterGroupImpl(unsigned char *serializedPageList, std::uint32_t length) final
Returns the locator of the page list envelope of the given buffer that contains the serialized page l...
void WriteNTupleHeader(const void *data, size_t nbytes, size_t lenHeader)
void InitImpl(unsigned char *serializedHeader, std::uint32_t length) final
RPageSinkDaos(std::string_view ntupleName, std::string_view uri, const ROOT::RNTupleWriteOptions &options)
RNTupleLocator CommitSealedPageImpl(ROOT::DescriptorId_t physicalColumnId, const RPageStorage::RSealedPage &sealedPage) final
ROOT::RNTupleDescriptor AttachImpl() final
LoadStructureImpl() has been called before AttachImpl() is called
void LoadStreamerInfo() final
Forces the loading of ROOT StreamerInfo from the underlying file.
std::string GetObjectClass() const
Return the object class used for user data OIDs in this ntuple.
std::unique_ptr< RPageSource > CloneImpl() const final
The cloned page source creates a new connection to the pool/container.
void LoadSealedPageImpl(const RNTupleLocator &locator, RSealedPage &sealedPage) final
std::vector< std::unique_ptr< ROOT::Internal::RCluster > > LoadClusters(std::span< ROOT::Internal::RCluster::RKey > clusterKeys) final
Populates all the pages of the given cluster ids and columns; it is possible that some columns do not...
void LoadPageListImpl(const RNTupleLocator &locator, unsigned char *buffer) final
void LoadStructureImpl() final
Fills fStructureBuffer with the compressed header and footer.
std::unique_ptr< RPageSource > OpenWithDifferentAnchor(const ROOT::Internal::RNTupleLink &anchorLink, const ROOT::RNTupleReadOptions &options={}) final
Creates a new PageSource using the same underlying file as this but referring to a different RNTuple,...
std::unique_ptr< RDaosContainer > fDaosContainer
A container that stores object data (header/footer, pages, etc.)
RPageSourceDaos(std::string_view ntupleName, std::string_view uri, const ROOT::RNTupleReadOptions &options)
DAOS-specific user-tunable settings for storing ntuples.
An in-memory subset of the packed and compressed pages of a cluster.
Definition RCluster.hxx:147
Helper class to compress data blocks in the ROOT compression frame format.
static std::size_t Zip(const void *from, std::size_t nbytes, int compression, void *to)
Returns the size of the compressed data, written into the provided output buffer.
Helper class to uncompress data blocks in the ROOT compression frame format.
static void Unzip(const void *from, size_t nbytes, size_t dataLen, void *to)
The nbytes parameter provides the size ls of the from buffer.
A helper class for piece-wise construction of an RNTupleDescriptor.
void SetVersion(std::uint16_t versionEpoch, std::uint16_t versionMajor, std::uint16_t versionMinor, std::uint16_t versionPatch)
void AddToOnDiskFooterSize(std::uint64_t size)
The real footer size also include the page list envelopes.
A helper class for serializing and deserialization of the RNTuple binary format.
static RResult< std::uint32_t > DeserializeString(const void *buffer, std::uint64_t bufSize, std::string &val)
static std::uint32_t SerializeUInt32(std::uint32_t val, void *buffer)
static std::uint32_t DeserializeUInt32(const void *buffer, std::uint32_t &val)
static std::uint32_t SerializeUInt16(std::uint16_t val, void *buffer)
static RResult< void > DeserializeFooter(const void *buffer, std::uint64_t bufSize, ROOT::Internal::RNTupleDescriptorBuilder &descBuilder)
static std::uint32_t SerializeString(const std::string &val, void *buffer)
static std::uint32_t DeserializeUInt16(const void *buffer, std::uint16_t &val)
static RResult< void > DeserializeHeader(const void *buffer, std::uint64_t bufSize, ROOT::Internal::RNTupleDescriptorBuilder &descBuilder)
static std::uint32_t DeserializeUInt64(const void *buffer, std::uint64_t &val)
static std::uint32_t SerializeUInt64(std::uint64_t val, void *buffer)
A page as being stored on disk, that is packed and compressed.
Definition RCluster.hxx:40
Base class for a sink with a physical storage backend.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSink.
Abstract interface to read data from an ntuple.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSource.
Base class for all ROOT issued exceptions.
Definition RError.hxx:78
The on-storage metadata of an RNTuple.
RNTupleLocator payload that is common for object stores using 64bit location information.
std::uint64_t GetLocation() const
Generic information about the physical location of data.
Common user-tunable settings for reading RNTuples.
Common user-tunable settings for storing RNTuples.
The class is used as a return type for operations that can fail; wraps a value of type T or an RError...
Definition RError.hxx:222
@ OC_UNKNOWN
Definition daos.h:109
const char * d_errstr(int rc)
static void d_iov_set(d_iov_t *iov, void *buf, size_t size)
Definition daos.h:50
uint16_t daos_oclass_id_t
Definition daos.h:135
ROOT::RLogChannel & NTupleLog()
Log channel for RNTuple diagnostics.
std::unique_ptr< T[]> MakeUninitArray(std::size_t size)
Make an array of default-initialized elements.
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
A pair of <object ID, distribution key> that can be used to issue a fetch/update request for multiple...
Definition RDaos.hxx:164
Describes a read/write operation on multiple attribute keys under the same object ID and distribution...
Definition RDaos.hxx:188
Entry point for an RNTuple in a DAOS container.
std::uint32_t fNBytesFooter
The size of the compressed ntuple footer.
std::uint64_t fVersionAnchor
Allows for evolving the struct in future versions.
std::string fObjClass
The object class for user data OIDs, e.g. SX
std::uint16_t fVersionEpoch
Version of the binary format supported by the writer.
RResult< std::uint32_t > Deserialize(const void *buffer, std::uint32_t bufSize)
std::uint32_t fLenHeader
The size of the uncompressed ntuple header.
std::uint32_t fLenFooter
The size of the uncompressed ntuple footer.
std::uint32_t fNBytesHeader
The size of the compressed ntuple header.
static constexpr std::size_t kOCNameMaxLength
This limit is currently not defined in any header and any call to daos_oclass_id2name() within DAOS u...
Definition RDaos.hxx:106
The identifiers that specifies the content of a (partial) cluster.
Definition RCluster.hxx:151
On-disk pages within a page source are identified by the column and page number.
Definition RCluster.hxx:50
A sealed page contains the bytes of a page as written to storage (packed & compressed).
Information about a single page in the context of a cluster's page range.
iovec for memory buffer
Definition daos.h:37
uint64_t hi
Definition daos.h:147
uint64_t lo
Definition daos.h:146
TMarker m
Definition textangle.C:8