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StandardProfileLikelihoodDemo.C File Reference

Detailed Description

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Standard demo of the Profile Likelihood calculator StandardProfileLikelihoodDemo

This is a standard demo that can be used with any ROOT file prepared in the standard way. You specify:

  • name for input ROOT file
  • name of workspace inside ROOT file that holds model and data
  • name of ModelConfig that specifies details for calculator tools
  • name of dataset

With default parameters the macro will attempt to run the standard hist2workspace example and read the ROOT file that it produces.

The actual heart of the demo is only about 10 lines long.

The ProfileLikelihoodCalculator is based on Wilks's theorem and the asymptotic properties of the profile likelihood ratio (eg. that it is chi-square distributed for the true value).

[#1] INFO:InputArguments -- The deprecated RooFit::CloneData(1) option passed to createNLL() is ignored.
[#1] INFO:Minimization -- p.d.f. provides expected number of events, including extended term in likelihood.
[#1] INFO:Minimization -- Including the following constraint terms in minimization: (alpha_syst2Constraint,alpha_syst3Constraint,gamma_stat_channel1_bin_0_constraint,gamma_stat_channel1_bin_1_constraint)
[#1] INFO:Minimization -- The following global observables have been defined and their values are taken from the model: (nominalLumi,nom_alpha_syst1,nom_alpha_syst2,nom_alpha_syst3,nom_gamma_stat_channel1_bin_0,nom_gamma_stat_channel1_bin_1)
[#1] INFO:Fitting -- RooAbsPdf::fitTo(simPdf) fixing normalization set for coefficient determination to observables in data
[#1] INFO:Fitting -- using CPU computation library compiled with -mavx2
[#0] PROGRESS:Minimization -- ProfileLikelihoodCalcultor::DoGLobalFit - find MLE
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minimization -- RooAbsMinimizerFcn::setOptimizeConst: activating const optimization
[#0] PROGRESS:Minimization -- ProfileLikelihoodCalcultor::DoMinimizeNLL - using Minuit2 / with strategy 1
[#1] INFO:Minimization --
RooFitResult: minimized FCN value: 15.5775, estimated distance to minimum: 1.48403e-11
covariance matrix quality: Full, accurate covariance matrix
Status : MINIMIZE=0
Floating Parameter FinalValue +/- Error
-------------------- --------------------------
SigXsecOverSM 1.1154e+00 +/- 5.87e-01
alpha_syst2 -8.9189e-03 +/- 9.83e-01
alpha_syst3 1.7896e-02 +/- 9.48e-01
gamma_stat_channel1_bin_0 9.9955e-01 +/- 4.93e-02
gamma_stat_channel1_bin_1 1.0036e+00 +/- 8.01e-02
>>>> RESULT : 95% interval on SigXsecOverSM is : [0, 2.32744]
making a plot of the profile likelihood function ....(if it is taking a lot of time use less points or the TF1 drawing option)
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) Creating instance of MINUIT
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) determining minimum likelihood for current configurations w.r.t all observable
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) minimum found at (SigXsecOverSM=1.11588)
.
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) Creating instance of MINUIT
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) determining minimum likelihood for current configurations w.r.t all observable
[#0] ERROR:InputArguments -- RooArgSet::checkForDup: ERROR argument with name SigXsecOverSM is already in this set
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) minimum found at (SigXsecOverSM=1.1155)
......................................................................................................
#include "TFile.h"
#include "TROOT.h"
#include "TSystem.h"
#include "RooWorkspace.h"
#include "RooAbsData.h"
#include "RooRealVar.h"
using namespace RooFit;
using namespace RooStats;
struct ProfileLikelihoodOptions {
double confLevel = 0.95;
int nScanPoints = 50;
bool plotAsTF1 = false;
double poiMinPlot = 1;
double poiMaxPlot = 0;
bool doHypoTest = false;
double nullValue = 0;
};
ProfileLikelihoodOptions optPL;
void StandardProfileLikelihoodDemo(const char *infile = "", const char *workspaceName = "combined",
const char *modelConfigName = "ModelConfig", const char *dataName = "obsData")
{
double confLevel = optPL.confLevel;
double nScanPoints = optPL.nScanPoints;
bool plotAsTF1 = optPL.plotAsTF1;
double poiXMin = optPL.poiMinPlot;
double poiXMax = optPL.poiMaxPlot;
bool doHypoTest = optPL.doHypoTest;
double nullParamValue = optPL.nullValue;
// -------------------------------------------------------
// First part is just to access a user-defined file
// or create the standard example file if it doesn't exist
const char *filename = "";
if (!strcmp(infile, "")) {
filename = "results/example_combined_GaussExample_model.root";
bool fileExist = !gSystem->AccessPathName(filename); // note opposite return code
// if file does not exists generate with histfactory
if (!fileExist) {
// Normally this would be run on the command line
cout << "will run standard hist2workspace example" << endl;
gROOT->ProcessLine(".! prepareHistFactory .");
gROOT->ProcessLine(".! hist2workspace config/example.xml");
cout << "\n\n---------------------" << endl;
cout << "Done creating example input" << endl;
cout << "---------------------\n\n" << endl;
}
} else
filename = infile;
// Try to open the file
// -------------------------------------------------------
// Tutorial starts here
// -------------------------------------------------------
// get the workspace out of the file
RooWorkspace *w = (RooWorkspace *)file->Get(workspaceName);
// get the modelConfig out of the file
ModelConfig *mc = (ModelConfig *)w->obj(modelConfigName);
// get the modelConfig out of the file
RooAbsData *data = w->data(dataName);
// ---------------------------------------------
// create and use the ProfileLikelihoodCalculator
// to find and plot the 95% confidence interval
// on the parameter of interest as specified
// in the model config
pl.SetConfidenceLevel(confLevel); // 95% interval
LikelihoodInterval *interval = pl.GetInterval();
// print out the interval on the first Parameter of Interest
cout << "\n>>>> RESULT : " << confLevel * 100 << "% interval on " << firstPOI->GetName() << " is : ["
<< interval->LowerLimit(*firstPOI) << ", " << interval->UpperLimit(*firstPOI) << "]\n " << endl;
// make a plot
cout << "making a plot of the profile likelihood function ....(if it is taking a lot of time use less points or the "
"TF1 drawing option)\n";
plot.SetNPoints(nScanPoints); // do not use too many points, it could become very slow for some models
if (poiXMin < poiXMax)
plot.SetRange(poiXMin, poiXMax);
TString opt;
if (plotAsTF1)
opt += TString("tf1");
plot.Draw(opt); // use option TF1 if too slow (plot.Draw("tf1")
// if requested perform also an hypothesis test for the significance
if (doHypoTest) {
RooArgSet nullparams("nullparams");
nullparams.addClone(*firstPOI);
nullparams.setRealValue(firstPOI->GetName(), nullParamValue);
pl.SetNullParameters(nullparams);
std::cout << "Perform Test of Hypothesis : null Hypothesis is " << firstPOI->GetName() << nullParamValue
<< std::endl;
auto result = pl.GetHypoTest();
std::cout << "\n>>>> Hypotheis Test Result \n";
result->Print();
}
}
winID h TVirtualViewer3D TVirtualGLPainter char TVirtualGLPainter plot
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char filename
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void data
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t result
#define gROOT
Definition TROOT.h:406
R__EXTERN TSystem * gSystem
Definition TSystem.h:555
RooAbsArg * first() const
Abstract base class for binned and unbinned datasets.
Definition RooAbsData.h:57
RooArgSet is a container object that can hold multiple RooAbsArg objects.
Definition RooArgSet.h:55
Variable that can be changed from the outside.
Definition RooRealVar.h:37
This class provides simple and straightforward utilities to plot a LikelihoodInterval object.
LikelihoodInterval is a concrete implementation of the RooStats::ConfInterval interface.
double UpperLimit(const RooRealVar &param)
return the upper bound of the interval on a given parameter
double LowerLimit(const RooRealVar &param)
return the lower bound of the interval on a given parameter
ModelConfig is a simple class that holds configuration information specifying how a model should be u...
Definition ModelConfig.h:35
const RooArgSet * GetParametersOfInterest() const
get RooArgSet containing the parameter of interest (return nullptr if not existing)
The ProfileLikelihoodCalculator is a concrete implementation of CombinedCalculator (the interface cla...
Persistable container for RooFit projects.
TObject * Get(const char *namecycle) override
Return pointer to object identified by namecycle.
A ROOT file is an on-disk file, usually with extension .root, that stores objects in a file-system-li...
Definition TFile.h:53
static TFile * Open(const char *name, Option_t *option="", const char *ftitle="", Int_t compress=ROOT::RCompressionSetting::EDefaults::kUseCompiledDefault, Int_t netopt=0)
Create / open a file.
Definition TFile.cxx:4082
const char * GetName() const override
Returns name of object.
Definition TNamed.h:47
virtual void Draw(Option_t *option="")
Default Draw method for all objects.
Definition TObject.cxx:274
Basic string class.
Definition TString.h:139
virtual Bool_t AccessPathName(const char *path, EAccessMode mode=kFileExists)
Returns FALSE if one can access a file using the specified access mode.
Definition TSystem.cxx:1296
The namespace RooFit contains mostly switches that change the behaviour of functions of PDFs (or othe...
Definition JSONIO.h:26
Namespace for the RooStats classes.
Definition Asimov.h:19
Author
Kyle Cranmer

Definition in file StandardProfileLikelihoodDemo.C.